View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_35 (Length: 235)
Name: NF15228_low_35
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 28958360 - 28958565
Alignment:
| Q |
18 |
atcaaaatcaactttaactctactttccaaaaaattggtatgttctt--atcatgtttcataaataacatttggatttgaatttgttgcttcaacatgaa |
115 |
Q |
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| T |
28958360 |
atcaaaatcaactttaactctaccttccaaaatattggtatgttcttttatcatgtttcataaataacatttgaatttgaatttgttgcttcaacattaa |
28958459 |
T |
|
| Q |
116 |
ctgaattcacatactttgttacaatgcttcgctatggaattagaagttattcctagtctttaaacatcactaggatgcaaagtcgtcatcttttccaagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28958460 |
ctgaattcacatactttgttacaatgcttcgctatggaattagaagttattcctagtctttaaacatcactaggatgcaaagtcgtcatcttttccaagc |
28958559 |
T |
|
| Q |
216 |
atttcc |
221 |
Q |
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|||||| |
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| T |
28958560 |
atttcc |
28958565 |
T |
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