View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_36 (Length: 233)
Name: NF15228_low_36
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 12306153 - 12305956
Alignment:
| Q |
14 |
agaagaatacccagtagcagagtttttatcagtggtatcagaagaatcaatagaagatgcaaaagaagaagagtctgattcaaattcaagtgccatgaca |
113 |
Q |
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| T |
12306153 |
agaagaatacccagtagcagagtttttatcagtggtatcagaagaatcaatagaagatgcaaaagaagaagagtctgattcaaattcaagtgccatgaca |
12306054 |
T |
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| Q |
114 |
cgccacctcttattcaaacattttttgttattacttagatgaatgaatcttttgttgttgtttagttgaagacatgttgtggccccaccaccagctacac |
213 |
Q |
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| T |
12306053 |
cgccacctcttattgaaacattttttgttat---ttagatgaatgaatcttttgttattgtttagttgaagacatgttgtggccccaccaccaactacac |
12305957 |
T |
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