View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_4 (Length: 614)
Name: NF15228_low_4
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 77 - 614
Target Start/End: Complemental strand, 10277684 - 10277153
Alignment:
| Q |
77 |
aaaatgtctagtaattgtaccaacaaacaagtataaaacaaaaccgacaaacaagaagcaatatcacaaaaataaggtttcctcaattaattttgtactc |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10277684 |
aaaatgtctagtaattgtaccaacaaacaagtataaaacaaaaccgacaaacaagaagcaatatcacaaaaataaggtttcctcaattaattttgtactc |
10277585 |
T |
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| Q |
177 |
tttttatgacaaataattaattatttt-agtataaagttctataaattaagatatgtataaaataaatagaaaagnnnnnnnnnnctacctcaagaagac |
275 |
Q |
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| T |
10277584 |
tttttttgacaaataattaattatttttagtataaagttctacaaattaagatatgtataaaataaagagagaa-------aaaactacctcaagaagcc |
10277492 |
T |
|
| Q |
276 |
gtttggcaaagtccactgcaataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagt |
375 |
Q |
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| T |
10277491 |
gtttggcaaaatccaccgcaataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagt |
10277392 |
T |
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| Q |
376 |
atctgaaagtgatggtgtaggattaaataaacaacaattcaccacaagaattccaatatctttagcttcaactttggttttctcaagaagttcatcaaca |
475 |
Q |
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| T |
10277391 |
atctgaaagtgatggtgtaggattaaataaacaacaattcaccacaagaattccaatatctttagcttcaactttggttttctcaagaagttcatcaaca |
10277292 |
T |
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| Q |
476 |
gctccaaaaagaactaaatttgattcatttcttgcttcatcaagtgttaatcttggtggcatttccaataatgcttcaggaacataagtggtgggtccca |
575 |
Q |
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| T |
10277291 |
gctccaaaaagaactaaatttgattcatttcttgcttcatcaagtgttagtcttggtggcatttccaataatgcttcaggaacataagtggtgggtccca |
10277192 |
T |
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| Q |
576 |
caccagacctttctaatatcttatgaatcaaaatgaaac |
614 |
Q |
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| T |
10277191 |
caccagacctttctaaaatcttatgaatcaaaatgaaac |
10277153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 296 - 441
Target Start/End: Complemental strand, 15237267 - 15237122
Alignment:
| Q |
296 |
ataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtag |
395 |
Q |
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|||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||| | ||||||||||| ||||| | | ||||| |||||||| | |
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| T |
15237267 |
ataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttg |
15237168 |
T |
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| Q |
396 |
gattaaataaacaacaattcaccacaagaattccaatatctttagc |
441 |
Q |
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| T |
15237167 |
gattaaacaaactacaattcacaaccaaaatcccaatatccttagc |
15237122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 441
Target Start/End: Complemental strand, 34052090 - 34051951
Alignment:
| Q |
302 |
ccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtaggattaa |
401 |
Q |
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| T |
34052090 |
ccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatagcagaaagagaaggtgtaggattaa |
34051991 |
T |
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| Q |
402 |
ataaacaacaattcaccacaagaattccaatatctttagc |
441 |
Q |
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| T |
34051990 |
acaaactacaattcacaaccaaaatcccaatatccttagc |
34051951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 440
Target Start/End: Complemental strand, 26452809 - 26452734
Alignment:
| Q |
365 |
ttaacaatagtatctgaaagtgatggtgtaggattaaataaacaacaattcaccacaagaattccaatatctttag |
440 |
Q |
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| T |
26452809 |
ttaacaatcatagctgaaagtgatggcgttggattaaacaaactacaattaacaacaagtataccaatatctttag |
26452734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 48670748 - 48670675
Alignment:
| Q |
293 |
gcaataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgatt |
366 |
Q |
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| T |
48670748 |
gcaataattccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatt |
48670675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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