View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_5 (Length: 545)
Name: NF15228_low_5
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Original strand, 41656314 - 41656826
Alignment:
| Q |
16 |
atcaaggtataactttgcactattctcnnnnnnnnnngggtatataagattgggcttttgaattcttaaaaagtatatttattatgctatcttgagcagc |
115 |
Q |
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| T |
41656314 |
atcaaggtataactttgcactattctcttttttt---gggtatataagattgggcttttgaattcttaaaaagtatatttattatgctatgttgagcagc |
41656410 |
T |
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| Q |
116 |
ctaacctagcagcaaagattactgggatgcttttggagatggacaatgctgaattgctggttctcattgaatcaccagagtctctttctgccaaggtgga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656411 |
ctaacctagcagcaaagattactgggatgcttttggagatggacaatgctgaattgctggttctcattgaatcaccagagtctctttctgccaaggtgga |
41656510 |
T |
|
| Q |
216 |
agaagctttccaagtgctgaagaactctaaagctaaagtttctggtcaggatgtacttcattcaaatttcctttcagctgaggttgctgtgaactaagtg |
315 |
Q |
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| T |
41656511 |
agaagctttccaagtgctgaagaactctaaagctaaagtttctggtcaggatgtacttcattcaaatttcctttcagctgaggttgctgtgaactaagtg |
41656610 |
T |
|
| Q |
316 |
aagaagcctccaggaacgacaaccttacagtatatttccacatgaaaagaacttttagttttatgttttccttccttagggatgaagagaattggtagta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656611 |
aagaagcctccaggaacgacaaccttacagtatatttccacatgaaaagaacttttagttttatgttttccttccttagggatgaagagaattggtagta |
41656710 |
T |
|
| Q |
416 |
atagtaaggtttaggatctactttgttttgaattttgtttacatggattaacttcgatgaattttggttcaatattttcatttttcattaatatgccgca |
515 |
Q |
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| T |
41656711 |
atagtaagatttaggatctactttgttttgaattttgtttacatggattaacttcaatgaattttggttcaatattttcatttttcattaatatgccgca |
41656810 |
T |
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| Q |
516 |
gcacaaacagggtacg |
531 |
Q |
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| T |
41656811 |
gcacaaacagggtacg |
41656826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 411
Target Start/End: Original strand, 41659656 - 41659726
Alignment:
| Q |
341 |
tacagtatatttccacatgaaaagaacttttagttttatgttttccttccttagggatgaagagaattggt |
411 |
Q |
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||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
41659656 |
tacagcatatttccaagtgaaaagaactttcagttttatgttttccttccttagggatgacaagaattggt |
41659726 |
T |
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