View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_6 (Length: 518)
Name: NF15228_low_6
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 23 - 501
Target Start/End: Original strand, 32282926 - 32283404
Alignment:
| Q |
23 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
122 |
Q |
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| T |
32282926 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
32283025 |
T |
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| Q |
123 |
aaaatcctccaacggaaccttcaaggggtaaaccacggtcaatgtttatgtacttgaaattggttaaagaattctcacatgaaaaataacataaatgtag |
222 |
Q |
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| T |
32283026 |
aaaatcctccaacggaaccttcaaggggtgaaccacggtcaatgtt-atgtacttgaaattggtcaaagaattctcacatgaaaaataacataaatgtag |
32283124 |
T |
|
| Q |
223 |
ttacaactgttcaaggttaaatgtcatttt-gttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaaggt |
321 |
Q |
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| T |
32283125 |
ttacaacattacaaggttaaatgtcatttttgttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaaagt |
32283224 |
T |
|
| Q |
322 |
aatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacgttataaagatcttcaaggt |
421 |
Q |
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| T |
32283225 |
aatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacgttataaagatcttcaaggt |
32283324 |
T |
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| Q |
422 |
aactgcaacaacaatttaaaataaaaatgggtgcattgtgtaatcgaggggaccattgcatggctatataggaaatgcat |
501 |
Q |
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| T |
32283325 |
aactgcaacaacaatttaaaataaaaaagggtgcattgtgtaatcgcgggggccattgcatggctatataggaaatgcat |
32283404 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 36879156 - 36879108
Alignment:
| Q |
103 |
ttcttagatgttccaaggtaaaaatcctccaacggaaccttcaaggggt |
151 |
Q |
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||||||||||| |||||||||| ||||||||| | ||||||||||||| |
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| T |
36879156 |
ttcttagatgtcccaaggtaaagatcctccaaagataccttcaaggggt |
36879108 |
T |
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