View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_8 (Length: 456)
Name: NF15228_low_8
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_8 |
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| [»] scaffold0166 (3 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 32212 - 32638
Alignment:
| Q |
16 |
caacaacgcatttctcatcttaatccaaatgctcaaccattttttccacaaaaccctaaaactcaatcaagaatggtttatgtaccaaaacgaacttgga |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
32212 |
caacaacgcatttctcatcttaatccaaatgctcaaccattttttccacaaaaccctaaaactcaatcaagaatgatttatgtaccaaaacgaactcgga |
32311 |
T |
|
| Q |
116 |
ttcaccagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgt |
215 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32312 |
ttcagcagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgt |
32411 |
T |
|
| Q |
216 |
aatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32412 |
aatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatctt |
32511 |
T |
|
| Q |
316 |
aattttgctttgnnnnnnntttcaggttcgataatttgttgatgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattg |
415 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32512 |
aattgtgctttgaaaaaaatttcaggttcgataatttgttgatgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattg |
32611 |
T |
|
| Q |
416 |
gtccaagtttgatttcgtttatttgcc |
442 |
Q |
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||||||||||||||||||||||||||| |
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| T |
32612 |
gtccaagtttgatttcgtttatttgcc |
32638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 76 - 393
Target Start/End: Complemental strand, 22594 - 22286
Alignment:
| Q |
76 |
actcaatcaagaatggtttatgtaccaaaacgaacttggattcaccagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaa |
175 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||| |||||| |||||||||| ||||||||| |||||||||||| |||| ||| |||||||| | |
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| T |
22594 |
actcaatcaaggatggtttatgatcgcaaacgaactcagattcagcagaaaactagtaaaagtacttatcatcgtgttgaaacttctataccatttccga |
22495 |
T |
|
| Q |
176 |
aaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactg |
275 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22494 |
aaacaattgaagaagctgaagcattacacattaccactgtaatgattcgaaatatccctaatcagtttaggtaattaactattcatctttttaaactgtg |
22395 |
T |
|
| Q |
276 |
attttatccctaatcaattcaatagtgtaatttcgatcttaattttgctttgnnnnnnntttcaggttcgataatttgttgatgattcttgatgttcatt |
375 |
Q |
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|||||||||| | ||| ||||||| ||||| ||||||| |||| ||||||||| ||||||||||||| ||| ||||||| ||||| |
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| T |
22394 |
attttatccc-------gtttttagggtaattttgatctcaattttgttttg--aaaaatttcaggtttgataatttgttgaagatacttgatgatcatt |
22304 |
T |
|
| Q |
376 |
gctttgaaatcaacaaga |
393 |
Q |
| |
|
|||||||||||||||||| |
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| T |
22303 |
gctttgaaatcaacaaga |
22286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 22669 - 22615
Alignment:
| Q |
16 |
caacaacgcatttctcatcttaatccaaatgctcaaccattttttccacaaaacc |
70 |
Q |
| |
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|||||||| |||| | ||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
22669 |
caacaacgtatttatgatcttaatccaaatgctgaaccattttatccacaaaacc |
22615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 24789829 - 24790255
Alignment:
| Q |
16 |
caacaacgcatttctcatcttaatccaaatgctcaaccattttttccacaaaaccctaaaactcaatcaagaatggtttatgtaccaaaacgaacttgga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
24789829 |
caacaacgcatttctcatcttaatccaaatgctcaaccattttttccacaaaaccctaaaactcaatcaagaatgatttatgtaccaaaacgaactcgga |
24789928 |
T |
|
| Q |
116 |
ttcaccagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgt |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24789929 |
ttcagcagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaaaaactattgaagaagctgaagcattacacattaccactgt |
24790028 |
T |
|
| Q |
216 |
aatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatctt |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790029 |
aatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactgattttatccctaatcaattcaatagtgtaatttcgatctt |
24790128 |
T |
|
| Q |
316 |
aattttgctttgnnnnnnntttcaggttcgataatttgttgatgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattg |
415 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790129 |
aattgtgctttgaaaaaaatttcaggttcgataatttgttgatgattcttgatgttcattgctttgaaatcaacaagattcttgatgatcctgcggattg |
24790228 |
T |
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| Q |
416 |
gtccaagtttgatttcgtttatttgcc |
442 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
24790229 |
gtccaagtttgatttcgtttatttgcc |
24790255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 76 - 393
Target Start/End: Complemental strand, 24780211 - 24779903
Alignment:
| Q |
76 |
actcaatcaagaatggtttatgtaccaaaacgaacttggattcaccagaaaactaccaaaagtactcatcatcgtgttggaactgttattccatttccaa |
175 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||| |||||| |||||||||| ||||||||| |||||||||||| |||| ||| |||||||| | |
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|
| T |
24780211 |
actcaatcaaggatggtttatgatcgcaaacgaactcagattcagcagaaaactagtaaaagtacttatcatcgtgttgaaacttctataccatttccga |
24780112 |
T |
|
| Q |
176 |
aaactattgaagaagctgaagcattacacattaccactgtaatgattcgaaacatccctaatcagtttaggtaattaactattcatctttttaaacactg |
275 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24780111 |
aaacaattgaagaagctgaagcattacacattaccactgtaatgattcgaaatatccctaatcagtttaggtaattaactattcatctttttaaactgtg |
24780012 |
T |
|
| Q |
276 |
attttatccctaatcaattcaatagtgtaatttcgatcttaattttgctttgnnnnnnntttcaggttcgataatttgttgatgattcttgatgttcatt |
375 |
Q |
| |
|
|||||||||| | ||| ||||||| ||||| ||||||| |||| ||||||||| ||||||||||||| ||| ||||||| ||||| |
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|
| T |
24780011 |
attttatccc-------gtttttagggtaattttgatctcaattttgttttg--aaaaatttcaggtttgataatttgttgaagatacttgatgatcatt |
24779921 |
T |
|
| Q |
376 |
gctttgaaatcaacaaga |
393 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24779920 |
gctttgaaatcaacaaga |
24779903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 24780286 - 24780232
Alignment:
| Q |
16 |
caacaacgcatttctcatcttaatccaaatgctcaaccattttttccacaaaacc |
70 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
24780286 |
caacaacgtatttatgatcttaatccaaatgctgaaccattttatccacaaaacc |
24780232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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