View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15228_low_9 (Length: 454)

Name: NF15228_low_9
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15228_low_9
NF15228_low_9
[»] chr4 (6 HSPs)
chr4 (1-378)||(31206990-31207365)
chr4 (376-439)||(31212852-31212915)
chr4 (376-439)||(31247282-31247345)
chr4 (376-435)||(31304378-31304437)
chr4 (13-84)||(31217315-31217384)
chr4 (56-84)||(31206674-31206702)
[»] chr3 (1 HSPs)
chr3 (92-336)||(41054542-41054785)
[»] chr2 (1 HSPs)
chr2 (328-378)||(8810124-8810174)
[»] chr6 (1 HSPs)
chr6 (376-435)||(13615046-13615105)
[»] chr5 (1 HSPs)
chr5 (328-378)||(31541020-31541070)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 31206990 - 31207365
Alignment:
Q  1 tttcagaactctaatctttactctacaaacctgccaaaacatcaaacccacgagggacacaagttaatgacacaacttcccatgtctaggggtgtgtttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  31206990 tttcagaactctaatctttactcaacaaacctgccaaaacatcaaaaccacgagggacacaagttaatgacacaacttcccatgcctaagggtgtgtttg 31207089  T
Q  101 aaactgctgattgttcaaggatggaaagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagcaaggaaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31207090 aaactgctgattgttcaaggatggaaagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagcaaggaaaga 31207189  T
Q  201 aactttctgttgggtcccacatgcaaaatatttcccctctcttttggacagaaagccttggatatcctgaaataacataaatgtctccactatatataan 300  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||| || |||||||||||| |||||||||| |||||||||||||||||||||||       
T  31207190 aactttctgctgggtcccacatgcaaaatgtttcccctctgttttgaacggaaagccttggaaatcctgaaatgacataaatgtctccactatatat--t 31207287  T
Q  301 nnnnnnaagccacttctctttatcaaccataaattctatcaacacaatatcataaattcattcttgtcaccgaacttt 378  Q
          ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  31207288 ttttttaagccacttctctttatcaaccataaattttatcaacacaatatcataaattcgttcttgtcaccgaacttt 31207365  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 31212852 - 31212915
Alignment:
Q  376 tttgactgccccagtttaattgacatggaatgctgttataaaatggctttttcttggatgatac 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31212852 tttgactgccccagtttaattgacatggaatgctgttataaaatggctttttcttggatgatac 31212915  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 31247282 - 31247345
Alignment:
Q  376 tttgactgccccagtttaattgacatggaatgctgttataaaatggctttttcttggatgatac 439  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31247282 tttgactgccccggtttaattgagatggaatgctgttatagaatggctttttcttggatgatac 31247345  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 31304378 - 31304437
Alignment:
Q  376 tttgactgccccagtttaattgacatggaatgctgttataaaatggctttttcttggatg 435  Q
    |||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||    
T  31304378 tttgactgccccagtttaattgacacaaaatgctgttatagaatggctttttcttggatg 31304437  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 31217315 - 31217384
Alignment:
Q  13 aatctttactctacaaacctgccaaaacatcaaacccacgagggacacaagttaatgacacaacttcccatg 84  Q
    ||||||||||| |||  || |||||||||||||| ||||||| ||  |||||||||||||||||||||||||    
T  31217315 aatctttactcaaca--cccgccaaaacatcaaaaccacgagtgatgcaagttaatgacacaacttcccatg 31217384  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 31206674 - 31206702
Alignment:
Q  56 gacacaagttaatgacacaacttcccatg 84  Q
    |||||||||||||||||||||||||||||    
T  31206674 gacacaagttaatgacacaacttcccatg 31206702  T

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Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 92 - 336
Target Start/End: Complemental strand, 41054785 - 41054542
Alignment:
Q  92 gtgtgtttgaaactgctgattgttcaaggatggaaagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagc 191  Q
    ||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41054785 gtgtgtttggaactgctgattgttcaaacaaggaaagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagc 41054686  T
Q  192 aaggaaagaaactttctgttgggtcccacatgcaaaatatttcccctctcttttggacagaaagccttggatatcctgaaataacataaatgtctccact 291  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||||||| |||||||||| |||||||||||||||||    
T  41054685 aaggaaagaaactttctgttgggtcccacatgcaaaatgtttcccctctgttttggacggaaaaccttggaaatcctgaaatgacataaatgtctccact 41054586  T
Q  292 atatataannnnnnnaagccacttctctttatcaaccataaattc 336  Q
    |||||| |       ||||||||| ||||||||||||||| ||||    
T  41054585 atatat-acttttttaagccacttttctttatcaaccatacattc 41054542  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 8810124 - 8810174
Alignment:
Q  328 cataaattctatcaacacaatatcataaattcattcttgtcaccgaacttt 378  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8810124 cataaattctaacaacacaatatcataaattcattcttgtcaccgaacttt 8810174  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 13615046 - 13615105
Alignment:
Q  376 tttgactgccccagtttaattgacatggaatgctgttataaaatggctttttcttggatg 435  Q
    ||||| |||||||||||||||||||   |||||||||||| |||||||||||||||||||    
T  13615046 tttgattgccccagtttaattgacacaaaatgctgttatagaatggctttttcttggatg 13615105  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 31541020 - 31541070
Alignment:
Q  328 cataaattctatcaacacaatatcataaattcattcttgtcaccgaacttt 378  Q
    |||||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  31541020 cataaactctaacaacacaatatcataaattcatgcttgtcaccgaacttt 31541070  T

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