View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15229_high_6 (Length: 332)

Name: NF15229_high_6
Description: NF15229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15229_high_6
NF15229_high_6
[»] scaffold0003 (2 HSPs)
scaffold0003 (94-321)||(41944-42171)
scaffold0003 (94-321)||(35274-35501)
[»] chr6 (4 HSPs)
chr6 (94-321)||(27445187-27445414)
chr6 (103-321)||(20909590-20909808)
chr6 (103-321)||(20924038-20924256)
chr6 (264-321)||(22081881-22081938)
[»] chr8 (2 HSPs)
chr8 (103-321)||(42312704-42312922)
chr8 (268-321)||(43227254-43227307)
[»] chr4 (3 HSPs)
chr4 (1-95)||(37618468-37618559)
chr4 (268-305)||(30180301-30180338)
chr4 (264-321)||(37618034-37618091)
[»] chr1 (1 HSPs)
chr1 (103-321)||(41326488-41326702)
[»] chr7 (2 HSPs)
chr7 (103-321)||(11504544-11504770)
chr7 (207-321)||(18939752-18939865)


Alignment Details
Target: scaffold0003 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 94 - 321
Target Start/End: Original strand, 41944 - 42171
Alignment:
Q  94 aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc 193  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  41944 aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg 42043  T
Q  194 atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 293  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  42044 atcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt 42143  T
Q  294 gattctaaaactattgcttcatcctatg 321  Q
    ||||||||||||||||||||||||||||    
T  42144 gattctaaaactattgcttcatcctatg 42171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 94 - 321
Target Start/End: Original strand, 35274 - 35501
Alignment:
Q  94 aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc 193  Q
    |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||     
T  35274 aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcg 35373  T
Q  194 atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 293  Q
    |||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  35374 atcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt 35473  T
Q  294 gattctaaaactattgcttcatcctatg 321  Q
    ||||||||||||||||||||||||||||    
T  35474 gattctaaaactattgcttcatcctatg 35501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 94 - 321
Target Start/End: Complemental strand, 27445414 - 27445187
Alignment:
Q  94 aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc 193  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  27445414 aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg 27445315  T
Q  194 atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 293  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  27445314 atcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt 27445215  T
Q  294 gattctaaaactattgcttcatcctatg 321  Q
    ||||||||||||||||||||||||||||    
T  27445214 gattctaaaactattgcttcatcctatg 27445187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 321
Target Start/End: Original strand, 20909590 - 20909808
Alignment:
Q  103 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 201  Q
    ||||||||||| |||||||||| || ||||| |||||||||| ||||| ||| || |||||||| || ||| | | | ||||||| ||||  ||||||||    
T  20909590 aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga 20909688  T
Q  202 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 301  Q
    || | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||| |  ||| ||| ||||||||||| ||||||| ||||||||||    
T  20909689 atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaa 20909788  T
Q  302 aactattgcttcatcctatg 321  Q
    |||| |||||||||| ||||    
T  20909789 aactcttgcttcatcatatg 20909808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 321
Target Start/End: Original strand, 20924038 - 20924256
Alignment:
Q  103 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 201  Q
    ||||||||||| |||||||||| || ||||| |||||||||| ||||| ||| || |||||||| || ||| | | | ||||||| ||||  ||||||||    
T  20924038 aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga 20924136  T
Q  202 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 301  Q
    || | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||| |  ||| ||| ||||||||||| ||||||| ||||||||||    
T  20924137 atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaa 20924236  T
Q  302 aactattgcttcatcctatg 321  Q
    |||| |||||||||| ||||    
T  20924237 aactcttgcttcatcatatg 20924256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 22081938 - 22081881
Alignment:
Q  264 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatg 321  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | ||||||||||||    
T  22081938 acaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctatg 22081881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 321
Target Start/End: Original strand, 42312704 - 42312922
Alignment:
Q  103 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 201  Q
    ||||||||||| |||||||||| ||  |||| |||||||||| ||||| ||| || ||||||||||| ||| | | | ||||||| ||||  ||||||||    
T  42312704 aattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaagat-gcagatttaactatacatatataaggaaaataattaatcataga 42312802  T
Q  202 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 301  Q
    || | |||||||||||||| |||||||   |||||| |||||||||| |||| | |||||  ||| ||| ||||||||||| ||||||| ||||||||||    
T  42312803 atatgataaagtaatataaaataacaatgaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaa 42312902  T
Q  302 aactattgcttcatcctatg 321  Q
     ||| |||||||||| ||||    
T  42312903 tactcttgcttcatcgtatg 42312922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 43227307 - 43227254
Alignment:
Q  268 agatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatg 321  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  43227307 agatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatg 43227254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37618468 - 37618559
Alignment:
Q  1 catagcccaaataatccttaaccaaatacagatgtgcacagaggaggaatctgattacagcgatgaaccactacgaatccagagaacctggtgaa 95  Q
    |||||||||||||||||||||||||| |||||||||||| |||||   | ||||||||||||||| |||||||||||||||||||||||||||||    
T  37618468 catagcccaaataatccttaaccaaacacagatgtgcaccgagga---acctgattacagcgatgtaccactacgaatccagagaacctggtgaa 37618559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
Q  268 agatatcttcctgtcaaacaacatttgattctaaaact 305  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaact 30180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 37618034 - 37618091
Alignment:
Q  264 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatg 321  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | ||||||||||||    
T  37618034 acaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctatg 37618091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 103 - 321
Target Start/End: Original strand, 41326488 - 41326702
Alignment:
Q  103 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 201  Q
    ||||||||||| ||||||||||   |||||| |||||||||| ||||| ||| || ||||||||  | ||| | | | ||||||| ||||  ||||||||    
T  41326488 aattcttattgtgcataggagc---aatgatgttttggaatcatcaaataaagat-gcagatttt-ctatacatatataaggaaaataattaatcataga 41326582  T
Q  202 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 301  Q
    || | |||||||||||||||||||||| | |||||| |||||||||| |||| | |||||  ||| ||| ||||||||||| ||||| | ||||||||||    
T  41326583 atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaa 41326682  T
Q  302 aactattgcttcatcctatg 321  Q
    |||| |||||||||| ||||    
T  41326683 aactcttgcttcatcatatg 41326702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 321
Target Start/End: Complemental strand, 11504770 - 11504544
Alignment:
Q  103 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaa-agaaggaaataatccatcataga 201  Q
    ||||||||||| |||||||||  || || || |||| ||||| ||||| | | |||||||||||||| ||||| || | |||||||||||  |||| |||    
T  11504770 aattcttattgtgcataggagtaaacataatgttttagaatcatcaaaaacagattgcagatttaactataaaaaatataaggaaataattaatca-aga 11504672  T
Q  202 atctaataaagtaatataacataacaacaga--------cacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 293  Q
    || | |||||||||| ||||||||||| | |        | ||| |||||||||| |||| | |||||  |||||||||||||| |||||||||||| ||    
T  11504671 atatgataaagtaatctaacataacaataaaacaataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacactt 11504572  T
Q  294 gattctaaaactattgcttcatcctatg 321  Q
    |||||||||||| |||||||||| ||||    
T  11504571 gattctaaaactcttgcttcatcatatg 11504544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 18939752 - 18939865
Alignment:
Q  207 ataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaacta 306  Q
    |||||||| | ||||||||||| | ||||||  ||||||| | |||| | ||||| |  ||||||||||||||  ||||||||| ||||||||||||||     
T  18939752 ataaagtattctaacataacaataaacacagttgcatcaattaagacgtcttcgatat-aaagatatcttccttccaaacaacacttgattctaaaactc 18939850  T
Q  307 ttgcttcatcctatg 321  Q
    ||| |||||| ||||    
T  18939851 ttgattcatcatatg 18939865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University