View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15229_low_1 (Length: 571)
Name: NF15229_low_1
Description: NF15229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15229_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 12 - 558
Target Start/End: Original strand, 36942690 - 36943236
Alignment:
| Q |
12 |
attattctcattgttcatgatccggtatttacttattatcataagcactgatgcttgtttgtttagttgcaaaacttagaacggtcgcagtagacataga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36942690 |
attattctcattgttcatgatccggtatttactttttatcataagcactgatgcttgtttgtttagttgcaaaacttagaacagtcgcagtagacataga |
36942789 |
T |
|
| Q |
112 |
gctctaggctgtagtgggtcgcattactccttgaacaccgttcaattatgggtacaagctctgtcattctaaagaacttctgacatattttgatgctata |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942790 |
gctctaggctgtagtgggtcgcattactccttgaacactgttcaattatgggtacaagctctgtcattctaaagaacttctgacatattttgatgctata |
36942889 |
T |
|
| Q |
212 |
attcaggcatggtctcaagctacaaaggaaggtaaagatgctattacgaagattgggcaggcattggattctattgattatcagcagttgtcctccaagt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942890 |
attcaggcatggtctcaagctacaaaggaaggtaaagatgctattacgaagattgggcaggcattggattctattgattatcagcagttgtcctccaagt |
36942989 |
T |
|
| Q |
312 |
acaggtcgcctgtgataaggtctcaagatcaagtgaatggcagttattatcatgctaatcagtcgacttgcagagcatcagagcctttacttaacgatgc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36942990 |
acaggtcgcctgtgataaggtctcaagatcaagtgaatggcagttattatcatgctaatcagtcgacttgcagagcatcagagcctttacttaacgatgc |
36943089 |
T |
|
| Q |
412 |
atctggtccgaaactgcacaaagattctgacgaacttgagattgaaataccatttgagctcatcacttcatgtgtggctacattaaccatgattcaggta |
511 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36943090 |
atctggtctgaaactgcacaaagattctgacgaagttgagattgaaataccatttgagctcatcacttcatgtgtggctacattaaccatgattcaggta |
36943189 |
T |
|
| Q |
512 |
attaaagacatgtcaaacttggcctatttcacaacttcccatctgat |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36943190 |
attaaagacatgtcaaacttggcctatttcacaacttcccatctgat |
36943236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University