View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15230_high_10 (Length: 264)
Name: NF15230_high_10
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15230_high_10 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 67 - 264
Target Start/End: Original strand, 8206123 - 8206320
Alignment:
| Q |
67 |
aaaaacaaaataacaatggctttcaaatagtacttacaagtaaaacaggcaataaaaaacgagagctcgtagaaaaattggttcgtaatccacgagcaag |
166 |
Q |
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| T |
8206123 |
aaaaaccaaataacaatggctgtcaaatagtacttacaagtaaaacaggcaataaaaaacgagagctcgcagaaaaattggttcgtaatccacgagcaag |
8206222 |
T |
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| Q |
167 |
attgccaatagcctggatagcttcaacagcaacagcaatattcacatctgtaataagctgcaagcaaaaaataatgccttagctttagaaacatgcat |
264 |
Q |
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| T |
8206223 |
attgccaatagcctggatagcttcaacagcaacagcaatattcacatctgtaataagctgcaagcaaaaaataatgccttagctttagaaacatgcat |
8206320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 8203658 - 8203726
Alignment:
| Q |
14 |
agacatgttaagtttctaaatcttgtagagaaatgtacttaatcggtaatattaaaaacaaaataacaa |
82 |
Q |
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| T |
8203658 |
agacatgttaagtttctaaatcttgtagagaaatgtacttaatcggtaatattaaaaacaaaataacaa |
8203726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 42360827 - 42361068
Alignment:
| Q |
23 |
aagtttctaaatcttgtagagaaatgtacttaatcggtaatattaaaaacaaaataacaatggctttcaaatagtacttacaagtaaaacaggcaataaa |
122 |
Q |
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| T |
42360827 |
aagtttctaaaactattagagaagtgtactcaaccggtaaggttaataacaaaataacaatggctgttgaatagtacttacaagtaaaacaggcaataaa |
42360926 |
T |
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| Q |
123 |
aaacgagagctcgtagaaaaattggttcgtaatccacgagcaagattgccaatagcctggatagcttcaacagcaacagcaatattcacatctgtaataa |
222 |
Q |
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| T |
42360927 |
aaacgagagctcgcagaaaaattggttcttaatccacgagcaagattgccaatagcctggacagcttcaacagcaacagcaatattcacatctgtaataa |
42361026 |
T |
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| Q |
223 |
gctgcaagcaaaaaataatgccttagctttagaaacatgcat |
264 |
Q |
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| T |
42361027 |
gctgcaagcaaaatataatgggttagttctagaaacatgcat |
42361068 |
T |
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