View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15230_high_12 (Length: 256)
Name: NF15230_high_12
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15230_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 8206318 - 8206559
Alignment:
| Q |
7 |
catcaatgaccgaggaaatgcaagtacaaacgcaacaacaatgatattcactattattcaaataacttgtgtcttgcatgaaaagccagaacagaataaa |
106 |
Q |
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| T |
8206318 |
catcaatgaccgaggaaatgcaagtacaaacgcaacaagaatgatgttcactattattcaaataacttgtgtcttgcatgaaaagccagaacagaataaa |
8206417 |
T |
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| Q |
107 |
atattttgctaccgattttatggtgtaactcaaaacaaacaacctttaatgtacttcagcccaaaaaagttcaaagcttccattaacacacaagtgctaa |
206 |
Q |
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| T |
8206418 |
atattttgctaccgattttatggtgtaactcaacacaaacaacctttaatgtacttcagcccaaacaagttcaaagcttccattaacacacaagtgctaa |
8206517 |
T |
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| Q |
207 |
ctttcgaagagaatgggctcaaaaagaattaaattaaattaa |
248 |
Q |
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| T |
8206518 |
ctttcgaagagaaagggctcaaaaagaattaaattaaattaa |
8206559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 42361066 - 42361286
Alignment:
| Q |
7 |
catcaatgaccgaggaaatgcaagtacaaacgcaacaacaatgatattcactattattcaaataacttgtgtcttgcatgaaaagccagaacagaataaa |
106 |
Q |
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|||||||||| ||| | |||||||||||||| || | ||||| || |||| | ||||||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
42361066 |
catcaatgactgagcagatgcaagtacaaacacagcgacaataatgttcatttttattcaaataacctctgtcttgcataaaaagccagaacagaataaa |
42361165 |
T |
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| Q |
107 |
atattttgctaccgattttatggtgtaactcaaaacaaacaacctttaatgtacttcagcccaaaaaagttcaaagcttccattaacaca--caagtgct |
204 |
Q |
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| T |
42361166 |
atattttactacaaactttatggtg-cactcaaaacaaacaacctttaaagcatttcagcccagacaagttcaaagcttccattagcacaggcaagtgct |
42361264 |
T |
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| Q |
205 |
aactttcgaagagaatgggctc |
226 |
Q |
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|||||| ||||||| |||||| |
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| T |
42361265 |
aactttttaagagaaagggctc |
42361286 |
T |
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