View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15230_high_13 (Length: 245)

Name: NF15230_high_13
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15230_high_13
NF15230_high_13
[»] chr1 (3 HSPs)
chr1 (13-104)||(1386994-1387088)
chr1 (169-227)||(1387154-1387212)
chr1 (12-92)||(23698193-23698273)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 1386994 - 1387088
Alignment:
Q  13 gagatgaagagacgcaaagaaatattcaagatggagttggaactcatagagaagcataacagcactgcagcagg---taatattatacgcttaat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  1386994 gagatgaagagacgcaaagaaatattcaagatggagttggaactcatagagaagcataacagcactgcagcaggtaataatattatacgcttaat 1387088  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 1387154 - 1387212
Alignment:
Q  169 ccttccatttgcttgttttttcacaggttttacaattggcctaaatgaattttctgata 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1387154 ccttccatttgcttgttttttcacaggttttacaattggcctaaatgaattttctgata 1387212  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 23698273 - 23698193
Alignment:
Q  12 tgagatgaagagacgcaaagaaatattcaagatggagttggaactcatagagaagcataacagcactgcagcaggtaatat 92  Q
    ||||||||| | |||||||||||||||||||| |   ||||||  |||||||||   ||||||||| || |||||||||||    
T  23698273 tgagatgaaaatacgcaaagaaatattcaagaagaccttggaatccatagagaactttaacagcacagctgcaggtaatat 23698193  T

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