View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15230_high_14 (Length: 229)
Name: NF15230_high_14
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15230_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 31068069 - 31067894
Alignment:
| Q |
7 |
aaagtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttgggtcgacaaacatgggagagtcactc |
106 |
Q |
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| T |
31068069 |
aaagtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttgggtcgacaaacatgggagagtcactc |
31067970 |
T |
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| Q |
107 |
gaatgccaaaaataggataactagctacccagctatattatattagtgatgcaatattaatgaataagactggttc |
182 |
Q |
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| T |
31067969 |
gaatgccaaaaataggataactagctacccagctatattatattagtgatgcaatattaataaataagactggttc |
31067894 |
T |
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Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 31059391 - 31059230
Alignment:
| Q |
9 |
agtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttgggtcgacaaacatgggagagtcactcga |
108 |
Q |
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| T |
31059391 |
agtgaatgcaatagtggtgccggaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttgggtcgacaaagaagggaaagtctttcga |
31059292 |
T |
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| Q |
109 |
atgccaaaaataggataactagctacccagctatattatattagtgatgcaatattaatgaataagact |
177 |
Q |
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| T |
31059291 |
gtgccaaaaataggataactagctacccagc-------tattagtgatgcaatattaatgaataagact |
31059230 |
T |
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