View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15230_high_4 (Length: 395)
Name: NF15230_high_4
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15230_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 9648380 - 9648742
Alignment:
| Q |
17 |
gaaccaaaatgaataaaacactaaagaagcaaatagaggggaaagttttgtgttattgattcagactatcatctgttacagatgaaccattagactgcag |
116 |
Q |
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| T |
9648380 |
gaaccaaaatgaataaaacagtaaagaagcaaatagagaggaaagttttgtgttattgattcagactatcatctgttacagatgaaccattagactgcag |
9648479 |
T |
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| Q |
117 |
ccacaacttgacagctccattcgttgtcaaaaaccagccagccatatcagcatccttttggaatggagcattatgttctttcatgtatgattcaactact |
216 |
Q |
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| T |
9648480 |
ccacaacttgacagctccattcgttgtcaaaaaccagccagccatatcagcatccttttggaatggagcattatgttctttcatgtatgattcaactact |
9648579 |
T |
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| Q |
217 |
ctaggtgccgacttgnnnnnnngagtcccggtataaattccaagtactggtgg-aagctccttccctgattccaaagccttagacaaatcatttatccaa |
315 |
Q |
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| T |
9648580 |
ctaggtgccgacttgtttttttgagtcccggtataaattccaagtactggtggaaagctccttccctgattccaaagccttagacaaatcatttatccaa |
9648679 |
T |
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| Q |
316 |
acaagtaaggctgttagagcagctccagttgagagactctttaaatgcaaagaccacttagtt |
378 |
Q |
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| T |
9648680 |
acaagtaaggctgttagagcagctccagttgagagactctttaaatgcaaagaccacttagtt |
9648742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 374
Target Start/End: Original strand, 9672935 - 9673065
Alignment:
| Q |
244 |
ccggtataaattccaagtactggtggaagctccttccctgattccaaagccttagacaaatcatttatccaaacaagtaaggctgttagagcagctccag |
343 |
Q |
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| T |
9672935 |
ccggtattaattccaagtagtggtggaaacttctcccccgattccaaagccttagacaagtcatttatccaaagatgtaatgcagtcatagcagcgccaa |
9673034 |
T |
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| Q |
344 |
ttgagagactctttaaatgcaaagaccactt |
374 |
Q |
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| T |
9673035 |
tcgagaggttctttaagtgtagagaccactt |
9673065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 9662815 - 9662887
Alignment:
| Q |
246 |
ggtataaattccaagtactggtggaagctccttccctgattccaaagccttagacaaatcatttatccaaaca |
318 |
Q |
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| T |
9662815 |
ggtagaaattccaagtacttgtggcagctcttcacctgattcaaaagccttggacaagtcatctatccaaaca |
9662887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 55949418 - 55949472
Alignment:
| Q |
264 |
tggtggaagctccttccctgattccaaagccttagacaaatcatttatccaaaca |
318 |
Q |
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| T |
55949418 |
tggtggaaggtcctctcctgattcaaaagccttagacaagtcatttatccaaaca |
55949472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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