View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15230_low_10 (Length: 277)

Name: NF15230_low_10
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15230_low_10
NF15230_low_10
[»] chr3 (1 HSPs)
chr3 (1-259)||(8524847-8525105)
[»] chr5 (7 HSPs)
chr5 (1-259)||(42125392-42125650)
chr5 (1-256)||(42130617-42130872)
chr5 (1-259)||(41711739-41711997)
chr5 (1-259)||(34230755-34231025)
chr5 (1-237)||(42118790-42119027)
chr5 (56-259)||(34238810-34239013)
chr5 (56-259)||(41569969-41570172)
[»] chr6 (1 HSPs)
chr6 (1-236)||(25520998-25521233)
[»] chr2 (1 HSPs)
chr2 (2-259)||(12250214-12250471)
[»] chr4 (1 HSPs)
chr4 (1-259)||(11120166-11120424)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 8524847 - 8525105
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8524847 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 8524946  T
Q  101 atgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaaga 200  Q
    ||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  8524947 atgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaaga 8525046  T
Q  201 ccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacacc 259  Q
    ||||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||||    
T  8525047 ccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacacc 8525105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 42125392 - 42125650
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 100  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||    
T  42125392 gtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaacccaccaaacttaga 42125491  T
Q  101 atgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaaga 200  Q
    |||||||| ||||| | |||||| ||||||||||||||||||| |||||| || | |||||| ||||||||||||||||||||  | | ||||||||||     
T  42125492 atgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgtagtttaccttgaagg 42125591  T
Q  201 ccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacacc 259  Q
    |||||||||||||| || ||  |||||||||||| ||||||||| ||||||||||||||    
T  42125592 ccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacacc 42125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 42130617 - 42130872
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 100  Q
    |||||||| | ||||| |||||||||||||||||||||||||  |||  ||||  |||||||||||||||||| ||||||  ||| |||| ||||||  |    
T  42130617 gtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaatccacaaaacttata 42130716  T
Q  101 atgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaaga 200  Q
    |||||||| |||||||||||||| ||||| ||||||||||||| |||| | || | ||||||| ||||||||||| |||||||||||| |||||  |||     
T  42130717 atgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattgaatgtacctgtaagg 42130816  T
Q  201 ccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgac 256  Q
    ||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||    
T  42130817 ccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgac 42130872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 41711997 - 41711739
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 100  Q
    |||||||| | ||||||||||||||| ||||||||||||||| |||| |||||  ||||| |||||||||||  ||||||||||||| ||||||||| ||    
T  41711997 gtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaaccgaccaaacttaga 41711898  T
Q  101 atgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaaga 200  Q
    ||||||||  |||| | |||||| ||||| ||||||||||||| |||| | || | ||||||||||||| ||| | ||||||| |||||||||||||||     
T  41711897 atgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatggaatataccttgaagg 41711798  T
Q  201 ccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacacc 259  Q
    || |||||||||||||| ||  ||| |||| |||||  || ||||||||| ||||||||    
T  41711797 ccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacacc 41711739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 34231025 - 34230755
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 100  Q
    |||||||| ||||||  ||||||||||  ||||||||| ||| |||||||| |  ||||||||| |||||||| ||||||| |||||| |||||||| ||    
T  34231025 gtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacccgccaaacttaga 34230926  T
Q  101 atgaaaataagagtcaaagaaat------------aattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaat 188  Q
    ||||||||  ||| || ||||||            ||||||| |||||||||||  ||||||  | ||||||||||||||||||||| ||||||| || |    
T  34230925 atgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagt 34230826  T
Q  189 ataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacacc 259  Q
    ||||||||||  ||||||||||||||||| ||  |||| ||||||||||  | ||||||||||||||||||    
T  34230825 ataccttgaaagccttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacacc 34230755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42118790 - 42119027
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaa-ctacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttg 99  Q
    |||||||| | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||| |    
T  42118790 gtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaacttag 42118889  T
Q  100 aatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaag 199  Q
    ||||||||  |||  |  |||||| ||||   | |||||| ||| |||| | || | ||||||||||||||||| |||||||||  ||| ||||   |||    
T  42118890 aatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttaccagtaag 42118989  T
Q  200 accttcacagccaaggtttagttcaatcacgtgaccag 237  Q
     | || | |||||||||| ||  |||||||||||||||    
T  42118990 gcgttaaaagccaaggttgagaccaatcacgtgaccag 42119027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 34239013 - 34238810
Alignment:
Q  56 agacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataa 155  Q
    |||||||||||||||||| ||||||  |||||  |||||||| |||| |||||| ||  || |||||  ||||||||||||||||||| |||| | || |    
T  34239013 agacaagtcaagatgtgtaagactcgtaaacctgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatga 34238914  T
Q  156 gcaagatggaaaagggtactgttaggattgaatataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtga 255  Q
     ||| || |||||||||||| ||||||| || |||||||||||  |||||||| |||||||| ||  |||| ||||||||||  | ||||||||||||||    
T  34238913 acaatattgaaaagggtactattaggatggagtataccttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtga 34238814  T
Q  256 cacc 259  Q
    ||||    
T  34238813 cacc 34238810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 41570172 - 41569969
Alignment:
Q  56 agacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataa 155  Q
    |||||||||||||||||| ||||||  ||| ||||||||||  ||||| ||||  ||||  ||||||| ||||| |||||||||||||  ||| | || |    
T  41570172 agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga 41570073  T
Q  156 gcaagatggaaaagggtactgttaggattgaatataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtga 255  Q
    |||||||| ||||| ||  |||||||||  | | |||||||||| | ||||||||||||||  ||  |||||||| |||||| ||  | ||| |||||||    
T  41570072 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 41569973  T
Q  256 cacc 259  Q
    ||||    
T  41569972 cacc 41569969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25521233 - 25520998
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 100  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||  ||||||||||||||| |     
T  25521233 gtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttagc 25521134  T
Q  101 atgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaaga 200  Q
    ||||||||  ||| ||  ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||| ||     
T  25521133 atgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaatataccttggagg 25521034  T
Q  201 ccttcacagccaaggtttagttcaatcacgtgacca 236  Q
    ||||||||||||||||| ||  |||||||| |||||    
T  25521033 ccttcacagccaaggttgaggccaatcacgcgacca 25520998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 2 - 259
Target Start/End: Original strand, 12250214 - 12250471
Alignment:
Q  2 taatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaa 101  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| ||| | || || ||||||||||| |||    
T  12250214 taatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaatccaccaaacttagaa 12250313  T
Q  102 tgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaagac 201  Q
    |||||||  ||||   |||||| ||||  ||||||||||||| |||| | || |||||||| |||||||||||| ||||| |  |||||||| | ||| |    
T  12250314 tgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgtaatataccatcaaggc 12250413  T
Q  202 cttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacacc 259  Q
    |||||  ||||||||  ||  ||||||| ||||||  ||| |||||||| ||||||||    
T  12250414 cttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacacc 12250471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 11120166 - 11120424
Alignment:
Q  1 gtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttga 100  Q
    |||||||| |||| | |||||||||||||||||||||||| | || |  ||||  |||||||| ||||||||| ||||||  ||||||||||||||| ||    
T  11120166 gtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaacccaccaaacttaga 11120265  T
Q  101 atgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttgaaga 200  Q
    |||||||  |||| |  |||||| |||||    |||||||||| |||| | || | ||||||||||||||||||| || ||||  ||||| |||||||||    
T  11120266 atgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatatgccttgaaga 11120365  T
Q  201 ccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacacc 259  Q
    |||||||||||||| || ||  |||||||| |||||| ||||||||| |||||||||||    
T  11120366 ccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacacc 11120424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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