View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15230_low_18 (Length: 216)
Name: NF15230_low_18
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15230_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 34042336 - 34042526
Alignment:
| Q |
20 |
gtgttcagtagcgttggatgatcctgcacagtgacacaaaaatgtgttttccatttagaatttgtttgagtcatatatgaatgaatgatcatcacagttg |
119 |
Q |
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| T |
34042336 |
gtgttcagtagcgttggatgatcctgcacagtgacacaaaaatgtgttttccatttagaatttgttcgagtcatatatgaatgaatgatcatcacagttg |
34042435 |
T |
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| Q |
120 |
cagtaaaatgattgatatagac-ttgtataaatcggtaggtttatcaatatgggtccattgttgattgttcaaagtagaataatctaccca |
209 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
34042436 |
cagtaaaatgattgatatagactttgtataaatcggtaggtttatcaatatgggtccattgttgattgttcaaagtagaatagtccaccca |
34042526 |
T |
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