View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15230_low_2 (Length: 456)
Name: NF15230_low_2
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15230_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 47582667 - 47582238
Alignment:
| Q |
18 |
cttggaagaggaaagaggtcagaaaaatatgttcaaagaagatgatgataggtggtgccggaagaagatggtgtcccggcatgggaccatacaacaaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47582667 |
cttggaagaggaaagaggtcagaaaaatatgttcaaagaagatgatgataggtggtgccggaagaagatggtgtcccggcatgcgaccatacaacaaacc |
47582568 |
T |
|
| Q |
118 |
aatgggtattatgcatggaactgaagaaagctaaatgtgacaccaaatacctatttcttaggctctgcaagttaacaaacaccaaagaaagacacctcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582567 |
aatgggtattatgcatggaactgaagaaagctaaatgtgacaccaaatacctatttcttaggctctgcaagttaacaaacaccaaagaaagacacctcaa |
47582468 |
T |
|
| Q |
218 |
ccttaaaaatagtaagaaaaattaacagggtacgaaagacaaggttttacacttttatttaaatagaagtctcttgtttatatatgattnnnnnnnntag |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
47582467 |
ccttaaaaatagtaagaaaaattattagggtacgaaagacaaggttttacacttttatttaaatagaagtctcttctttatatatgattaaaaaaaa-at |
47582369 |
T |
|
| Q |
318 |
aaaaggaaaaggagttaaaaccaattcactttataaaacaaccttataatggtttacatgacaaacctatttttgaattttggatatccctaccctgcat |
417 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582368 |
agaaggaaaaggagttaaaaccaattcactttaaaaaacaaccttataatggtttacatgacaaacctatttttgaattttggatatccctaccctgcat |
47582269 |
T |
|
| Q |
418 |
ggtacccttaaatgatatttggattcatctc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47582268 |
ggtacccttaaatgatatttggattcatctc |
47582238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University