View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15230_low_6 (Length: 335)

Name: NF15230_low_6
Description: NF15230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15230_low_6
NF15230_low_6
[»] chr1 (1 HSPs)
chr1 (9-319)||(28393229-28393519)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 28393229 - 28393519
Alignment:
Q  9 cagagacaagacatgtgctatctaactctacatcaactcccatgaattaacaaatcataaaagggcccttatttctcctcaccaactcaaattccatcct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||                      
T  28393229 cagagacaagacatgtgctatctaactctacatcaactcccatgaattaacaaatc-taaaagggcccttatttctcctcac------------------ 28393309  T
Q  109 ttttatttccggcttgaataatattatattgttcataccatgattatctatattcataagagtaggaggagctcatagagacatgaatctatatataaga 208  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28393310 -tttatttccggcttgaataatattatattgtacataccatgattatctatattcataagagtaggaggagctcatagagacatgaatctatatataaga 28393408  T
Q  209 tattaattagattcaggaggtggcagtacatgcatgatgatttctttccacaattgctattattagcttgagacaagcaatattaaaggagtgaaatgtg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28393409 tattaattagattcaggaggtggcagtacatgcatgatgatttctttccacaattgctattattagcttgagacaagcaatattaaaggagtgaaatgtg 28393508  T

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