View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_high_12 (Length: 392)
Name: NF15231_high_12
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 46657135 - 46656776
Alignment:
| Q |
18 |
ccttcttcatcaacactttctcacctttaaatgtctccattggatcaacaacagcttcaacaccaatcctcacaccaatcttaagcacttgcacaatcct |
117 |
Q |
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| T |
46657135 |
ccttcttcaccaacactttctcacctttaaatatctccattggatcaacaacagcttcaacaccaatcctcacaccaatcttaagaacttgcacaatcct |
46657036 |
T |
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| Q |
118 |
aaagcaagttcctttagttgtgaagaaggaatgtaagacaaactaccaaaacatgcatagatgacagagcaagctttatttcaaataaaaaactttagac |
217 |
Q |
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| T |
46657035 |
aaagcaatttcctttagttgtgaagaaggaatgtaagacaaactaccaaaacatgcatatatgacagagcaagctttgtttcaaataaaaaactttagac |
46656936 |
T |
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| Q |
218 |
atttggtttcagaatcattgatgcatcccttatcttatcttttttaccaaaccaaacctttttagcaactttctcataattaacctcaaaaagtattcac |
317 |
Q |
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| T |
46656935 |
atttggtttcagaatcattgatgcatcccttatcgt-----ttttaccaaaccaaacctttttagcaactttctcataattaacctcgaaaagtattcac |
46656841 |
T |
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| Q |
318 |
caatattccttgtgctgagagtttagattctttgaattgatcaatagcttctttccatgcctttg |
382 |
Q |
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| T |
46656840 |
caatattccttgtgctgagagtttagattctttgaattgatcaatagcttctttccatgcctttg |
46656776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 41562457 - 41562317
Alignment:
| Q |
111 |
caatcctaaagcaagttcctttagttgtgaagaaggaatgtaagacaaactaccaaaacatgcatagatgacagagcaagctttatttcaaataaaaaac |
210 |
Q |
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| T |
41562457 |
caatcctaaagcaagttcctttagttgtgaagtaggaatgaaagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaac |
41562358 |
T |
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| Q |
211 |
tttagacatttggtttcagaatcattgatgcatcccttatc |
251 |
Q |
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| T |
41562357 |
tttagacatttggtttcggaatcgtcgatgaatcccttatc |
41562317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 41562828 - 41562733
Alignment:
| Q |
20 |
ttcttcatcaacactttctcacctttaaatgtctccattggatcaacaacagcttcaacaccaatcctcacaccaatcttaagcacttgcacaatc |
115 |
Q |
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| T |
41562828 |
ttcttcaccaacactttctcacctttatatatctccattggatcaacaaaagcctcaacaccaatcctcacaccaatcttaagcacttgcacaatc |
41562733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 41562202 - 41562126
Alignment:
| Q |
306 |
aaaagtattcaccaatattccttgtgctgagagtttagattctttgaattgatcaatagcttctttccatgcctttg |
382 |
Q |
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| T |
41562202 |
aaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg |
41562126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 296
Target Start/End: Complemental strand, 41562260 - 41562232
Alignment:
| Q |
268 |
accaaacctttttagcaactttctcataa |
296 |
Q |
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| T |
41562260 |
accaaacctttttagcaactttctcataa |
41562232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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