View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15231_high_14 (Length: 362)
Name: NF15231_high_14
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43014390 - 43014045
Alignment:
| Q |
1 |
aaaagatgaaaaccaactttagtaatagctacctaaatgagaaaagggattataaacaccattaaattatgtcatcatagttttaaaggtttgcagtgta |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43014390 |
aaaagaagaaaaccaactttagtaatagctacctaaatgagaaaagggattataaacaccattaaattatgtcaccatagttttaaaggttc-------- |
43014299 |
T |
|
| Q |
101 |
accgcgaccgcgattactatacgtaccggcttgccttgatcaaatttgtgtccacagcgagggcagtgtttggatccacacaactggtgctcttccagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43014298 |
accgcgaccgcgattactatacgtaccggcttgccttgatcaaatttgtgtccacagcgagggcagtgtttggatccacacaactggtgctcttccagct |
43014199 |
T |
|
| Q |
201 |
tagaatctatgagattagagctactaacgttgctcatcttattattcatcatcttttttgatgaaactttattaatataatactaagaaggtctttgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43014198 |
tagaatctatgagattagagctactaacgttgctcatcttattattcatcatcttttttgatgaaactttattaatataatactaagaaggtctttgtgt |
43014099 |
T |
|
| Q |
301 |
tgaattggaattcttttactatgaaatagttctccaacacctcttagtataatc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43014098 |
tgaattggaattcttttactatgaaatagttctccaacacctcttagcataatc |
43014045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University