View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_high_15 (Length: 354)
Name: NF15231_high_15
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 2487865 - 2487525
Alignment:
| Q |
1 |
attattggattctcttgcttcaaac-gctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccaacaagctttatggtacaaaattttg |
99 |
Q |
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| T |
2487865 |
attattggattctcttgcttcaaaccgctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccgacaagctttatggtacaaaattttg |
2487766 |
T |
|
| Q |
100 |
tagaggggctaaaaattgttttgattgtgctcttaattctaccagagttgcctcaagtgattgttctatgaagtacttcttgagttagctttaaagccta |
199 |
Q |
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| T |
2487765 |
tagaggggctaaaaattgttttgattgtgctcttaattctaccagagttgcctcaagtgattgttctatgaagtacttcttgagttagctttaaagccta |
2487666 |
T |
|
| Q |
200 |
tatagaagtttatttcaaccgtaaaacatttatttaaaagactcaaaatcactgcaagttcattttaacttttctctaaccataaattctttgttgaaaa |
299 |
Q |
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| T |
2487665 |
tatagaagtttatttcaaccgtaaaacttttatttaaaagactcaaaatcactgcaagttcattttaacttttctctaaccataaattctttgttgaaaa |
2487566 |
T |
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| Q |
300 |
ttttatttaaactagctctgggatgttgtaagactaatatt |
340 |
Q |
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| T |
2487565 |
ttttatttaaactagctctgggatgttgtaaaactaatatt |
2487525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 2495998 - 2495893
Alignment:
| Q |
2 |
ttattggattctcttgcttcaaacgctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccaacaagctttatggtacaaaattttgta |
101 |
Q |
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| T |
2495998 |
ttattggattctcttgcttcaaacgtcgttgatagccatggattttaccaaaccattgtaggaaaaaagcctaacaggctttatggtacaatattatgta |
2495899 |
T |
|
| Q |
102 |
gagggg |
107 |
Q |
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|||||| |
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| T |
2495898 |
gagggg |
2495893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 2489587 - 2489484
Alignment:
| Q |
2 |
ttattggattctcttgcttcaaacgctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccaacaagctttatggtacaaaattttgta |
101 |
Q |
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||||||||||||||||||||||| | || ||||||| || |||||||||||| ||||||||| || ||| || | |||||||| ||| ||| |||| |
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| T |
2489587 |
ttattggattctcttgcttcaaatgtggttgatcaccaaggattttaccaaaccactgtaggagaaaactccagcagggtttatggttcaatattatgta |
2489488 |
T |
|
| Q |
102 |
gagg |
105 |
Q |
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|||| |
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| T |
2489487 |
gagg |
2489484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 2492868 - 2492815
Alignment:
| Q |
2 |
ttattggattctcttgcttcaaacgctgtggatcaccgtgggttttaccaaacc |
55 |
Q |
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| T |
2492868 |
ttattgaattctcttgcttcaaacgtggttgatcaccatggattttaccaaacc |
2492815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 26779566 - 26779629
Alignment:
| Q |
107 |
gctaaaaattgttttgattgtgctcttaattctaccagagttgcctcaagtgattgttctatga |
170 |
Q |
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| T |
26779566 |
gctaaaaactgtttcgattgtgctcttaattcaaccaaagtagcctcaagtgattgctctatga |
26779629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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