View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_high_18 (Length: 347)
Name: NF15231_high_18
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 5725440 - 5725119
Alignment:
| Q |
20 |
caaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctcatcataccagtcatcgaccattatggtgcaacctgtt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725440 |
caaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctcatcataccagtcatcgaccattatggtgcaacctgtt |
5725341 |
T |
|
| Q |
120 |
atcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725340 |
atcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaa |
5725241 |
T |
|
| Q |
220 |
accctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaat |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725240 |
accctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaat |
5725141 |
T |
|
| Q |
320 |
agctcgacatgcttcttctctc |
341 |
Q |
| |
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|||| ||||||||||||||||| |
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|
| T |
5725140 |
agcttgacatgcttcttctctc |
5725119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 94 - 340
Target Start/End: Original strand, 4370335 - 4370581
Alignment:
| Q |
94 |
catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt |
193 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| | |
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| T |
4370335 |
catcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctct |
4370434 |
T |
|
| Q |
194 |
aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatg |
293 |
Q |
| |
|
||||||||| |||||||||||||||| ||| | || ||| ||||||||| |||| ||||||| ||||||||||||||| | |||| ||| | ||||| |
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| T |
4370435 |
aatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatg |
4370534 |
T |
|
| Q |
294 |
acattgttgtagaaaaaccttgcaatagctcgacatgcttcttctct |
340 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
4370535 |
gcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctctct |
4370581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 4365864 - 4366188
Alignment:
| Q |
20 |
caaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctca---tcataccagtcatcgaccattatggtgcaacct |
116 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||||| |||| |||| | ||| ||| | | |||| |||||||||||||||||| |
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|
| T |
4365864 |
caaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagccgatccatcaaccattatggtgcaacct |
4365963 |
T |
|
| Q |
117 |
gttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggct |
216 |
Q |
| |
|
|||| ||||| | |||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| | |
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| T |
4365964 |
gttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggat |
4366063 |
T |
|
| Q |
217 |
taaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgc |
316 |
Q |
| |
|
|||| ||||| || ||| ||||||||| |||| ||||||| ||||||||||||||||| |||| || | ||||| |||||||||||||||||||||| |
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|
| T |
4366064 |
taaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgtaaacggtatggcattgttgtagaaaaaccttgc |
4366163 |
T |
|
| Q |
317 |
aatagctcgacatgcttcttctctc |
341 |
Q |
| |
|
||| || |||||||||| |||||| |
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|
| T |
4366164 |
aatcacttgacatgcttcctctctc |
4366188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 131 - 318
Target Start/End: Complemental strand, 4414352 - 4414164
Alignment:
| Q |
131 |
agctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt-aatctcatcgaaagacggtggcttaaaccctacacc |
229 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||| |||||| |||| ||||||||||||||| || ||||| ||||| |||||| ||| |||| || |
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|
| T |
4414352 |
agctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaaccc |
4414253 |
T |
|
| Q |
230 |
atgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaa |
318 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
4414252 |
atgtcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaa |
4414164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 271
Target Start/End: Original strand, 4360539 - 4360716
Alignment:
| Q |
94 |
catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt |
193 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| |||| | || |||| || ||| |||| |||||||||| | |
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|
| T |
4360539 |
catcgaccattatgctgcaacctgtgatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatcc |
4360638 |
T |
|
| Q |
194 |
aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcact |
271 |
Q |
| |
|
||| ||| ||| |||||||||||| ||||| |||||| ||||||||| ||||||||| || ||||||||||||| |
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|
| T |
4360639 |
aatatcaaagaaccccggtggcttaaatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcact |
4360716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 334
Target Start/End: Original strand, 4390245 - 4390417
Alignment:
| Q |
162 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
261 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | | ||||||||||||||||| ||| || |
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|
| T |
4390245 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattctaacaa |
4390344 |
T |
|
| Q |
262 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
334 |
Q |
| |
|
| || | |||||| ||||| | | | |||| ||||||||||||||||||| ||||| |||||||| ||||| |
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|
| T |
4390345 |
actccttactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4390417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 334
Target Start/End: Original strand, 4377562 - 4377734
Alignment:
| Q |
162 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
261 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | | ||||||||||||||||| || || |
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|
| T |
4377562 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattcgaacaa |
4377661 |
T |
|
| Q |
262 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
334 |
Q |
| |
|
| || |||||| ||||| | | |||| | |||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
4377662 |
actccatactcttcaccgccttcattggtattaaattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4377734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 334
Target Start/End: Original strand, 4385132 - 4385304
Alignment:
| Q |
162 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
261 |
Q |
| |
|
|||| |||||| ||| ||||||| |||||| |||||||||| ||||| || ||| ||||||||||||| | | ||||||||| ||||||| || || |
|
|
| T |
4385132 |
aacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcggcacaaaccctacaccacatctcgaaaccatagcacacatttgaacaa |
4385231 |
T |
|
| Q |
262 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
334 |
Q |
| |
|
| || |||||| ||||| | | | |||| ||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
4385232 |
actccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4385304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4360468 - 4360514
Alignment:
| Q |
20 |
caaaaagaatgttccctttggactgtttacgaagaagtttagtatgt |
66 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
4360468 |
caaaaagaatgttccctttggactgttcagtaacaagtttagtatgt |
4360514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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