View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_high_20 (Length: 342)
Name: NF15231_high_20
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 3485958 - 3485674
Alignment:
| Q |
13 |
aaaatcacatttaagaaatagatggtcataacaattgcatcctcccacaaaaagttgcacgttattcaaaagcacaccctacctaattaagttatttgtt |
112 |
Q |
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| T |
3485958 |
aaaatcacatttaaaaaatagatggtcataacaactgcatccttccacaaaaagttgcacgttattcagaagcacaccctacctaattaagttatttgtt |
3485859 |
T |
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| Q |
113 |
gtaggaataagattccaaagcagtcctcaagcaaaaaggtttatcttcaaaagaactactttgtgccaaataatgttagacatttaagaagtaatggtgt |
212 |
Q |
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| T |
3485858 |
gtaggaataagattccaaagcagtcctcaaacaaaaaggtttaccttcaaaagaactgctttgtgccaaataatgttagacatttaagaagtaatggtgt |
3485759 |
T |
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| Q |
213 |
ttttcatcttggacaagtagttataaacaccactaacaataaaggtggtaattacttgtatggatttgaccttataaaatccaat |
297 |
Q |
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| T |
3485758 |
ttttcatcttggacaagtagttataaacaccactaacaataaaggtggtaattacttatatggatttgaccttataaaatccaat |
3485674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 3485649 - 3485606
Alignment:
| Q |
282 |
ccttataaaatccaataataaagaatcttggtaaatgaatcaat |
325 |
Q |
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| T |
3485649 |
ccttataaaatccaataataaagaatcttggtaaaagaatcaat |
3485606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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