View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_high_22 (Length: 320)

Name: NF15231_high_22
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_high_22
NF15231_high_22
[»] chr6 (5 HSPs)
chr6 (99-301)||(21150771-21150974)
chr6 (176-302)||(33726582-33726708)
chr6 (220-302)||(21140348-21140431)
chr6 (52-95)||(785445-785488)
chr6 (52-95)||(16766723-16766766)
[»] chr1 (5 HSPs)
chr1 (52-95)||(48547975-48548018)
chr1 (52-95)||(6332696-6332739)
chr1 (52-95)||(47989523-47989566)
chr1 (50-95)||(6612161-6612206)
chr1 (52-97)||(18556444-18556489)
[»] chr7 (6 HSPs)
chr7 (52-96)||(7438732-7438776)
chr7 (52-95)||(24339668-24339711)
chr7 (52-94)||(18039025-18039067)
chr7 (54-95)||(11272576-11272617)
chr7 (52-97)||(26033449-26033494)
chr7 (52-96)||(21560529-21560573)
[»] scaffold0044 (1 HSPs)
scaffold0044 (52-95)||(53206-53249)
[»] chr8 (1 HSPs)
chr8 (52-95)||(22652002-22652045)
[»] chr5 (1 HSPs)
chr5 (52-95)||(21542056-21542099)
[»] chr4 (2 HSPs)
chr4 (52-102)||(24613684-24613734)
chr4 (52-93)||(28084548-28084589)
[»] chr2 (1 HSPs)
chr2 (54-102)||(4882679-4882727)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 301
Target Start/End: Complemental strand, 21150974 - 21150771
Alignment:
Q  99 cacgtaacacgccttcaatgtgtcggtgcaacatatatcatctcgaactgaaaa-atgataaatagtgcaatgacttgattaagtaataatgaataaatt 197  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| ||||||| || | ||||| ||| |||| ||| |||    
T  21150974 cacggaacacgccttcaatgtgttagtgcaacatatatcatctcgaactgaaaatatgataaatggtgcaataacattattaaataacaatggatacatt 21150875  T
Q  198 tctcgataacaagttctacatcttcaagttgatcctgtactttttggtgggagatgacggttttatgatcctctaggctctttcgattcatgataggttc 297  Q
    |||| |||| ||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  21150874 tctccataataagttttacatcttgaagttgatcctgtacatttttgtgggagatgatggttttatgatcctctaggctctttcgattcataataggttc 21150775  T
Q  298 agct 301  Q
    ||||    
T  21150774 agct 21150771  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 33726708 - 33726582
Alignment:
Q  176 attaagtaataatgaataaatttctcgataacaagttctacatcttcaagttgatcctgtactttttggtgggagatgacggttttatgatcctctaggc 275  Q
    |||||||||| ||||||||||||||| |||| ||||| ||| ||||||||||| ||||||| ||||| | |||||||| ||||||||||||||||| |||    
T  33726708 attaagtaatgatgaataaatttctccataataagttttacctcttcaagttgttcctgtagttttttgggggagatgtcggttttatgatcctcttggc 33726609  T
Q  276 tctttcgattcatgataggttcagctt 302  Q
    ||||||||||||  |||||||||||||    
T  33726608 tctttcgattcacaataggttcagctt 33726582  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 21140431 - 21140348
Alignment:
Q  220 ttcaagttgatcctgtactttttggtggg--agatgacggttttatgatcctctaggctctttcgattcatgataggttcagctt 302  Q
    |||||||||||||| ||||||||  ||||  ||||||| |||||||||| |||| ||||||||||||||  ||||| ||||||||    
T  21140431 ttcaagttgatcctttactttttt-tgggtaagatgacagttttatgatactcttggctctttcgattcgcgatagtttcagctt 21140348  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 785488 - 785445
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||    
T  785488 acataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtc 785445  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 16766723 - 16766766
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  16766723 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 16766766  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 48548018 - 48547975
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  48548018 acataattcaatgtaattacaagtattggtgtcgtgtcggtgtc 48547975  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 6332696 - 6332739
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||    
T  6332696 acataattcagtgtaattacaagtatcggtgtcgtgttggtgtc 6332739  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 47989523 - 47989566
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  47989523 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 47989566  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 6612206 - 6612161
Alignment:
Q  50 ttacataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||||| ||||||||||||| |||||| ||||||| ||||    
T  6612206 ttacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtc 6612161  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 18556489 - 18556444
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtcag 97  Q
    |||||||| ||||||||||||||||| |||| |||| |||||||||    
T  18556489 acataatttaatgtaattacaagtattggtgtcgtgacggtgtcag 18556444  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 7438732 - 7438776
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtca 96  Q
    |||||||||||||||||||||||| |||||| | |||||||||||    
T  7438732 acataattcaatgtaattacaagtgtcggtgtcatgtcggtgtca 7438776  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 24339668 - 24339711
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  24339668 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 24339711  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 18039025 - 18039067
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgt 94  Q
    |||||||||| ||||||||||||| |||||| |||||||||||    
T  18039025 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgt 18039067  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11272617 - 11272576
Alignment:
Q  54 ataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||| ||||||||||||| |||||| ||||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 11272576  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 26033494 - 26033449
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtcag 97  Q
    |||||||||| ||||||||||||| |||||  ||||||||||||||    
T  26033494 acataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcag 26033449  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 21560529 - 21560573
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtca 96  Q
    |||||||||| ||||||||||||| |||||| ||| |||||||||    
T  21560529 acataattcagtgtaattacaagtgtcggtgtcgtatcggtgtca 21560573  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 53206 - 53249
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||| |||||||| |||| |||||||||||||||||||    
T  53206 acataattcagtgtaattataagtgtcggtgccgtgtcggtgtc 53249  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 22652002 - 22652045
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  22652002 acataattcaatataattacaagtgtcggtgtcgtgtcggtgtc 22652045  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 21542056 - 21542099
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtc 95  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 21542099  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 24613734 - 24613684
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtgtcagccacg 102  Q
    |||||||||||||||| ||||||| |||||| | |||||||||||| ||||    
T  24613734 acataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacg 24613684  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 28084548 - 28084589
Alignment:
Q  52 acataattcaatgtaattacaagtatcggtgccgtgtcggtg 93  Q
    |||||||||||||||||||||||| || ||| ||||||||||    
T  28084548 acataattcaatgtaattacaagtgtctgtgtcgtgtcggtg 28084589  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 4882727 - 4882679
Alignment:
Q  54 ataattcaatgtaattacaagtatcggtgccgtgtcggtgtcagccacg 102  Q
    |||||||| ||||||||||||| ||| || |||||||||||||| ||||    
T  4882727 ataattcagtgtaattacaagtgtcgatgtcgtgtcggtgtcagacacg 4882679  T

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