View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_high_43 (Length: 214)

Name: NF15231_high_43
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_high_43
NF15231_high_43
[»] scaffold0440 (1 HSPs)
scaffold0440 (4-171)||(1121-1288)
[»] chr8 (21 HSPs)
chr8 (1-113)||(42992989-42993101)
chr8 (1-116)||(9935341-9935455)
chr8 (1-116)||(32890951-32891065)
chr8 (1-116)||(32897075-32897189)
chr8 (1-116)||(7771294-7771408)
chr8 (1-116)||(14799399-14799513)
chr8 (1-117)||(14418003-14418115)
chr8 (1-116)||(5542143-5542257)
chr8 (7-116)||(1882734-1882843)
chr8 (14-116)||(39727300-39727404)
chr8 (1-117)||(36819033-36819148)
chr8 (15-116)||(10705919-10706020)
chr8 (1-116)||(39735531-39735649)
chr8 (7-116)||(24250171-24250278)
chr8 (1-109)||(22219706-22219814)
chr8 (30-111)||(1171414-1171493)
chr8 (62-116)||(10700132-10700186)
chr8 (1-37)||(10700091-10700127)
chr8 (18-90)||(31379430-31379502)
chr8 (59-116)||(39689782-39689838)
chr8 (16-72)||(31399063-31399119)
[»] chr7 (17 HSPs)
chr7 (1-116)||(42767277-42767392)
chr7 (1-116)||(351848-351962)
chr7 (1-116)||(3817294-3817408)
chr7 (1-116)||(339433-339547)
chr7 (1-116)||(3811152-3811266)
chr7 (1-116)||(28420942-28421056)
chr7 (1-116)||(12804062-12804176)
chr7 (1-116)||(20239013-20239127)
chr7 (2-116)||(35147986-35148100)
chr7 (1-116)||(5979156-5979271)
chr7 (1-116)||(22741901-22742022)
chr7 (1-118)||(26383688-26383808)
chr7 (1-94)||(43540047-43540140)
chr7 (1-116)||(5849587-5849702)
chr7 (6-111)||(26381136-26381239)
chr7 (1-72)||(30219272-30219343)
chr7 (1-47)||(18666547-18666592)
[»] chr6 (19 HSPs)
chr6 (1-122)||(32035263-32035383)
chr6 (4-116)||(21190849-21190960)
chr6 (1-116)||(4580304-4580418)
chr6 (1-116)||(8650786-8650900)
chr6 (1-116)||(8662764-8662878)
chr6 (1-116)||(31756196-31756312)
chr6 (1-116)||(21782736-21782850)
chr6 (1-116)||(25354273-25354388)
chr6 (3-116)||(18778647-18778760)
chr6 (1-116)||(21197004-21197118)
chr6 (1-111)||(17581688-17581797)
chr6 (1-116)||(25343686-25343805)
chr6 (1-110)||(21770546-21770655)
chr6 (22-116)||(6098060-6098158)
chr6 (9-115)||(6102693-6102803)
chr6 (1-70)||(21783337-21783406)
chr6 (1-70)||(21789560-21789629)
chr6 (7-92)||(34603337-34603421)
chr6 (7-92)||(34724614-34724698)
[»] chr2 (16 HSPs)
chr2 (1-116)||(28682928-28683042)
chr2 (1-116)||(36750477-36750591)
chr2 (1-111)||(35090637-35090746)
chr2 (1-116)||(30965390-30965505)
chr2 (1-116)||(31002439-31002554)
chr2 (1-116)||(31008417-31008532)
chr2 (1-110)||(35084665-35084773)
chr2 (1-116)||(35438693-35438806)
chr2 (1-116)||(13456162-13456276)
chr2 (1-116)||(13462103-13462217)
chr2 (1-111)||(13149674-13149783)
chr2 (5-116)||(11048536-11048646)
chr2 (1-116)||(44716787-44716902)
chr2 (1-117)||(23343623-23343738)
chr2 (9-116)||(29833278-29833384)
chr2 (1-37)||(31651667-31651703)
[»] chr3 (24 HSPs)
chr3 (1-116)||(28964930-28965042)
chr3 (1-116)||(10244317-10244431)
chr3 (1-116)||(17055775-17055890)
chr3 (1-116)||(49151674-49151788)
chr3 (1-116)||(49157741-49157855)
chr3 (1-113)||(55003398-55003509)
chr3 (1-116)||(10238195-10238309)
chr3 (1-116)||(10760633-10760747)
chr3 (1-116)||(11839708-11839822)
chr3 (1-116)||(11846046-11846160)
chr3 (1-118)||(48128028-48128144)
chr3 (1-116)||(10766854-10766968)
chr3 (1-116)||(30051085-30051199)
chr3 (1-116)||(8331849-8331963)
chr3 (1-110)||(53069043-53069151)
chr3 (1-112)||(17593268-17593379)
chr3 (1-116)||(42191203-42191317)
chr3 (1-116)||(42197145-42197259)
chr3 (1-116)||(38449048-38449160)
chr3 (1-116)||(38455535-38455647)
chr3 (15-116)||(24643534-24643635)
chr3 (1-49)||(34300559-34300607)
chr3 (30-116)||(13445142-13445227)
chr3 (4-94)||(46656749-46656839)
[»] chr1 (14 HSPs)
chr1 (1-117)||(50306251-50306366)
chr1 (1-116)||(1078286-1078400)
chr1 (1-112)||(34740048-34740158)
chr1 (1-116)||(25387487-25387601)
chr1 (4-117)||(25381517-25381629)
chr1 (1-116)||(44410072-44410186)
chr1 (1-116)||(31058106-31058220)
chr1 (5-116)||(24963685-24963795)
chr1 (1-116)||(27955223-27955336)
chr1 (1-116)||(24926738-24926851)
chr1 (1-116)||(12183562-12183681)
chr1 (1-82)||(31051606-31051687)
chr1 (21-92)||(38151981-38152052)
chr1 (1-46)||(8092898-8092943)
[»] chr5 (21 HSPs)
chr5 (1-116)||(28525369-28525483)
chr5 (1-116)||(28531465-28531579)
chr5 (1-116)||(32096943-32097058)
chr5 (1-118)||(32094140-32094257)
chr5 (1-116)||(7389531-7389645)
chr5 (1-116)||(12686162-12686276)
chr5 (1-116)||(12692264-12692378)
chr5 (1-107)||(24054397-24054502)
chr5 (7-116)||(30384359-30384469)
chr5 (1-116)||(41297339-41297453)
chr5 (4-116)||(16215157-16215268)
chr5 (1-110)||(14610211-14610321)
chr5 (1-116)||(19059747-19059861)
chr5 (1-115)||(19066091-19066204)
chr5 (9-116)||(30772353-30772460)
chr5 (1-94)||(26316796-26316889)
chr5 (15-94)||(26509926-26510002)
chr5 (55-110)||(8706454-8706508)
chr5 (1-111)||(37896286-37896395)
chr5 (1-32)||(20500200-20500231)
chr5 (1-37)||(28542300-28542336)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-116)||(5597-5711)
[»] chr4 (23 HSPs)
chr4 (1-116)||(24288049-24288161)
chr4 (1-117)||(33458248-33458364)
chr4 (1-116)||(10733229-10733343)
chr4 (1-116)||(10739322-10739436)
chr4 (1-116)||(10946998-10947112)
chr4 (1-116)||(10953091-10953205)
chr4 (1-116)||(26956812-26956926)
chr4 (1-116)||(26963324-26963438)
chr4 (1-116)||(50168655-50168769)
chr4 (21-116)||(4632869-4632963)
chr4 (1-116)||(6257188-6257302)
chr4 (1-116)||(48161021-48161132)
chr4 (1-116)||(48167240-48167351)
chr4 (1-116)||(49976649-49976763)
chr4 (1-82)||(3769629-3769710)
chr4 (1-116)||(33461380-33461490)
chr4 (25-111)||(34308060-34308144)
chr4 (1-85)||(19686341-19686425)
chr4 (10-111)||(55473133-55473230)
chr4 (1-47)||(50427438-50427483)
chr4 (1-30)||(4632453-4632482)
chr4 (37-94)||(50156043-50156100)
chr4 (1-49)||(44831661-44831709)
[»] scaffold0363 (1 HSPs)
scaffold0363 (1-117)||(604-716)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-116)||(172873-172987)
[»] scaffold0208 (2 HSPs)
scaffold0208 (16-116)||(6600-6699)
scaffold0208 (1-116)||(12458-12572)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-112)||(38490-38600)
[»] scaffold1114 (1 HSPs)
scaffold1114 (1-116)||(1150-1261)
[»] scaffold0185 (1 HSPs)
scaffold0185 (1-77)||(5985-6061)


Alignment Details
Target: scaffold0440 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 1288 - 1121
Alignment:
Q  4 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1288 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacatgttttatgaaatctgtttttaattaagacc 1189  T
Q  104 taaatttccaacacactattctcctcttccattggatataaattctcaacacccaaacatgggcagga 171  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1188 taaatttccaacacactattctcctcttccattgaatataaattctcaacacccaaacatgggcagga 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42993101 - 42992989
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  42993101 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttttaattaag 42993002  T
Q  101 acctaaatttcca 113  Q
    |||||||||||||    
T  42993001 acctaaatttcca 42992989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 9935341 - 9935455
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  9935341 atgtcgtagatccgatcataatcatattcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgttttt-attaag 9935439  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  9935440 acctaaatttccaaca 9935455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 32890951 - 32891065
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  32890951 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 32891049  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  32891050 acctaaatttccaaca 32891065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 32897075 - 32897189
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  32897075 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 32897173  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  32897174 acctaaatttccaaca 32897189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 7771294 - 7771408
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| || ||||||||||||||| | ||||||    
T  7771294 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatctgtttat-attaag 7771392  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  7771393 acctaaatttccaaca 7771408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14799513 - 14799399
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||| ||||| | ||||||    
T  14799513 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatttgtttat-attaag 14799415  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  14799414 acctaaatttccaaca 14799399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 14418003 - 14418115
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||   ||| |||| |||||||||||||||||||| ||||||    
T  14418003 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttaaacatgttttatgaaatctgttttt-attaag 14418098  T
Q  101 acctaaatttccaacac 117  Q
    |||||||||||||||||    
T  14418099 acctaaatttccaacac 14418115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5542257 - 5542143
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || |||| |||||| ||| | |||||     
T  5542257 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattataaaatctatttat-attaaa 5542159  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  5542158 acctaaatttccaaca 5542143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 1882843 - 1882734
Alignment:
Q  7 tagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaa 106  Q
    |||||||| ||||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||| |||||||||||||||  ||||||||||||    
T  1882843 tagatccgttcatattcatgttcaatgttttgtttgcttccgctattgattcttaattgttgaacatgttctatgaaatctgttttatattaagacctaa 1882744  T
Q  107 atttccaaca 116  Q
    ||||||||||    
T  1882743 atttccaaca 1882734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 39727404 - 39727300
Alignment:
Q  14 gatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgttttta--attaagacctaaatttc 111  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||    
T  39727404 gatcataatcatgttcaatgttttgtttgcttccgttattgattcataattgttgaacatgttttatgaaatctatttttattattaagacctaaatttc 39727305  T
Q  112 caaca 116  Q
    |||||    
T  39727304 caaca 39727300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 36819033 - 36819148
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||||||| || |||||| || ||||| | ||||||    
T  36819033 atgtcgtagatccgatcataatcatattcaatgttttgtttgcttccactattgattcataattgttgaacatgtattatgagatttgtttat-attaag 36819131  T
Q  101 acctaaatttccaacac 117  Q
    |||||||||||||||||    
T  36819132 acctaaatttccaacac 36819148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 10705919 - 10706020
Alignment:
Q  15 atcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaatttccaa 114  Q
    ||||||||||||||||||||||||||||||| |||  |||||| |  |||||| |||| || ||||||||||||||||||||||||||||||||||||||    
T  10705919 atcataatcatgttcaatgttttgtttgcttacgctattgatttacgattgttaaacatgtattatgaaatctgtttttaattaagacctaaatttccaa 10706018  T
Q  115 ca 116  Q
    ||    
T  10706019 ca 10706020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39735649 - 39735531
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgttttta--att- 97  Q
    ||||||||||| | |||||||||||||||||| |||| ||| |||||||  ||||||||||||||||||||| |||||||||||||| ||||||  |||     
T  39735649 atgtcgtagatacaatcataatcatgttcaatattttatttacttccgctattgattcataattgttgaacatgttttatgaaatctatttttattatta 39735550  T
Q  98 aagacctaaatttccaaca 116  Q
    || ||||||||||||||||    
T  39735549 aaaacctaaatttccaaca 39735531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 24250171 - 24250278
Alignment:
Q  7 tagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaa 106  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||  |||||||||| ||||| |||| |||||||||||| |||||||  |||||||||||    
T  24250171 tagatccgatcataataatgttcaatattttgtttgtttccgctattgattcatatttgttcaacatgttttatgaaatatgttttt--ttaagacctaa 24250268  T
Q  107 atttccaaca 116  Q
    |||| |||||    
T  24250269 attttcaaca 24250278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 22219814 - 22219706
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgtttt-gtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaa 99  Q
    ||||||||||||||||||||||||||||||| |||||  ||| |||| ||  ||||||||||| | ||||||| |||||||||||||| ||||| |||||    
T  22219814 atgtcgtagatccgatcataatcatgttcaaagttttctttttcttctgctattgattcataactattgaacatgttttatgaaatctcttttt-attaa 22219716  T
Q  100 gacctaaatt 109  Q
    ||||||||||    
T  22219715 gacctaaatt 22219706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 1171414 - 1171493
Alignment:
Q  30 aatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaatttc 111  Q
    ||||||||||||||||||||  |||| |||||||||||||| | |||| ||||||||||||||  |||||||||||||||||    
T  1171414 aatgttttgtttgcttccgcggttgaatcataattgttgaatatgtttcatgaaatctgtttt--attaagacctaaatttc 1171493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 10700132 - 10700186
Alignment:
Q  62 attgttgaacacgttttatgaaatctgtttttaattaagacctaaatttccaaca 116  Q
    |||||| |||| || ||||||||| ||||||||||||||||||||||||||||||    
T  10700132 attgttaaacatgtattatgaaatatgtttttaattaagacctaaatttccaaca 10700186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10700091 - 10700127
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgtttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  10700091 atgtcgtagatccgatcataatcatgttcaatgtttt 10700127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 31379502 - 31379430
Alignment:
Q  18 ataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtt 90  Q
    |||||||||||||||||||| ||||| |||| | ||||||||||||| || |||| || ||||||||| ||||    
T  31379502 ataatcatgttcaatgttttatttgcctccgtcattgattcataattattaaacatgtgttatgaaatttgtt 31379430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 39689782 - 39689838
Alignment:
Q  59 ataattgttgaacacgttttatgaaatctgtttttaattaagacctaaatttccaaca 116  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||| | |||||||    
T  39689782 ataattgttgaacatgttttatgaaatctgttttt-attaaaacctaagtctccaaca 39689838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 31399119 - 31399063
Alignment:
Q  16 tcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaaca 72  Q
    ||||||||||||||||||| |||||||| ||| |  ||||||||||||| |||||||    
T  31399119 tcataatcatgttcaatgtattgtttgcctccactattgattcataattattgaaca 31399063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 42767392 - 42767277
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  42767392 atgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttttaattaag 42767293  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  42767292 acctaaatttccaaca 42767277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 351848 - 351962
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  351848 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctgttgattcataattgttgaacatgttttatgaaatctgtttat-attaag 351946  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  351947 agctaaatttccaaca 351962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3817408 - 3817294
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  3817408 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 3817310  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  3817309 acctaaatttccaaca 3817294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 339433 - 339547
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||| ||| | ||||||    
T  339433 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctctttat-attaag 339531  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  339532 agctaaatttccaaca 339547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3811266 - 3811152
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  3811266 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 3811168  T
Q  101 acctaaatttccaaca 116  Q
    ||||| ||||||||||    
T  3811167 acctacatttccaaca 3811152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28421056 - 28420942
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||| | || |||    
T  28421056 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttatgaaatctgtttat-atcaag 28420958  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  28420957 agctaaatttccaaca 28420942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12804062 - 12804176
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||  ||||||||||||||||| ||||||||||  |||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  12804062 atgtcgtagatccgttcatgttcatgttcaatgttttgcttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgttttt-attaag 12804160  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  12804161 acctaaatttccaaca 12804176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 20239013 - 20239127
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||  || ||||||||||| |||||||||||| ||||| | ||||||    
T  20239013 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatgtatgattgttgaacatgttttatgaaatttgtttat-attaag 20239111  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  20239112 acctaaatttccaaca 20239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 35148100 - 35147986
Alignment:
Q  2 tgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaaga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||| |||||||||||||||||||| |||||||    
T  35148100 tgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatcgatttataattgttgaacatgttttatgaaatctgttttt-attaaga 35148002  T
Q  102 cct-aaatttccaaca 116  Q
    | | ||||||||||||    
T  35148001 cataaaatttccaaca 35147986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5979271 - 5979156
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||| |||  |||||| |  |||||| |||| || ||||||||||||||||||||||||    
T  5979271 atgtcgtagatccaatcataatcatgttcaatagtttgtttgctttcgctattgatttacgattgttcaacatgtattatgaaatctgtttttaattaag 5979172  T
Q  101 acctaaatttccaaca 116  Q
    |||||||||| |||||    
T  5979171 acctaaattttcaaca 5979156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 22742022 - 22741901
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttg-------attcataattgttgaacacgttttatgaaatctgttttt 93  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||  |||       |||||||||||||||||| ||||||||||| ||||| ||    
T  22742022 atgtcgtagatccgatcataatcatgttcaatgttcagtttgcttccgctattgttgattcattcataattgttgaacatgttttatgaaacctgttctt 22741923  T
Q  94 aattaagacctaaatttccaaca 116  Q
     ||| ||||||||||||||||||    
T  22741922 -attgagacctaaatttccaaca 22741901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26383688 - 26383808
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtt---tttaatt 97  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||| |   ||||||||||||||||||||| || ||||||||||| ||   ||| |||    
T  26383688 atgtcgtagatccgatcatgatcatgttcaatattttgtttgtttctgttgttgattcataattgttgaacatgtcttatgaaatctattctgttttatt 26383787  T
Q  98 aagacctaaatttccaacaca 118  Q
     |||| |||||||||||||||    
T  26383788 tagacttaaatttccaacaca 26383808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43540047 - 43540140
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgttttta 94  Q
    |||| ||||||||||||||||||||||||||| |||| |||  ||||||  ||||||||||||| ||||||| ||| |||||||||||||||||    
T  43540047 atgttgtagatccgatcataatcatgttcaatattttatttaattccgctattgattcataattattgaacatgttctatgaaatctgttttta 43540140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 5849587 - 5849702
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaaca-cgttttatgaaatctgtttttaattaa 99  Q
    |||||||||||||| ||||| | ||||||||||||||| ||||||||||  ||||||||||||  |||||||   |||||| |||| ||||||| |||||    
T  5849587 atgtcgtagatccgttcatatttatgttcaatgttttggttgcttccgctattgattcataatcattgaacataattttataaaatttgttttt-attaa 5849685  T
Q  100 gacctaaatttccaaca 116  Q
    ||||||||||| |||||    
T  5849686 gacctaaatttgcaaca 5849702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 26381136 - 26381239
Alignment:
Q  6 gtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagaccta 105  Q
    ||||||| |||||| |||||||||||| || |||||| || | || ||||||||||||||||||||| || ||||||||||| ||||  ||| |||||||    
T  26381136 gtagatctgatcatgatcatgttcaatattgtgtttgttttcccccttgattcataattgttgaacatgtcttatgaaatctatttt--atttagaccta 26381233  T
Q  106 aatttc 111  Q
    ||||||    
T  26381234 aatttc 26381239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30219343 - 30219272
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaaca 72  Q
    |||||||||||||| ||||| |||||||||| |||||||||| ||||||   |||||||||||| |||||||    
T  30219343 atgtcgtagatccgttcatattcatgttcaacgttttgtttgattccgctaatgattcataattattgaaca 30219272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18666592 - 18666547
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttcc 47  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  18666592 atgtcgta-atctgatcataatcaagttcaatgttttgtttgcttcc 18666547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32035383 - 32035263
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  32035383 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 32035285  T
Q  101 acctaaatttccaacacactat 122  Q
    |||||||||||||||| |||||    
T  32035284 acctaaatttccaacagactat 32035263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 21190960 - 21190849
Alignment:
Q  4 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||| ||| |||||||    
T  21190960 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatattttatgaaatctgtttataa-taagacc 21190862  T
Q  104 taaatttccaaca 116  Q
    |||||||||||||    
T  21190861 taaatttccaaca 21190849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 4580418 - 4580304
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||| || ||||||||||||||| | ||||||    
T  4580418 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcatagttgttgaacatgtattatgaaatctgtttat-attaag 4580320  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  4580319 acctaaatttccaaca 4580304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8650900 - 8650786
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  8650900 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 8650802  T
Q  101 acctaaatttccaaca 116  Q
    | |||||||| |||||    
T  8650801 agctaaatttacaaca 8650786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8662878 - 8662764
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  8662878 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 8662780  T
Q  101 acctaaatttccaaca 116  Q
    | |||||||| |||||    
T  8662779 agctaaatttacaaca 8662764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 31756312 - 31756196
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgt-ttttaattaa 99  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||   ||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  31756312 atgtcgtagatccgattataatcatgttcaatgttttatttgcttccgttgttgattcataattgttgaacatgttttatgaaatctgtttttttattaa 31756213  T
Q  100 gacctaaatttccaaca 116  Q
    |||||||||||||||||    
T  31756212 gacctaaatttccaaca 31756196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21782850 - 21782736
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| || ||||||||||||||| | ||||||    
T  21782850 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatctgtttat-attaag 21782752  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||| ||||    
T  21782751 acctaaatttctaaca 21782736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 25354273 - 25354388
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| |  ||||||||||| || ||||||||||||||||||||||||    
T  25354273 atgtcgtagatccgatcataatcatgttcaatgctttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaag 25354372  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  25354373 atctaaatttccaaca 25354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 18778647 - 18778760
Alignment:
Q  3 gtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacg-ttttatgaaatctgtttttaattaaga 101  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||| ||||||| | ||||||||||| || ||||||||||||    
T  18778647 gtcgtagatccgatcataattatgttcaacgttttgtttgcttccgctattgattcataattattgaacatgtttttatgaaatttg-ttttaattaaga 18778745  T
Q  102 cctaaatttccaaca 116  Q
    |||||||||||||||    
T  18778746 cctaaatttccaaca 18778760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21197118 - 21197004
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||| ||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||||||| | || |    
T  21197118 atgttgtagatccgttcatacttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgttttt-actatg 21197020  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  21197019 acctaaatttccaaca 21197004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17581688 - 17581797
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||  | |||||||||| |||||||| |||||||||| | ||||||| ||| ||    
T  17581688 atgtcgtagatcctataataatcatgttcaatgttttgtttgcttccgctatcgattcataatagttgaacatgttttatgaattatgttttt-atttag 17581786  T
Q  101 acctaaatttc 111  Q
    | |||||||||    
T  17581787 atctaaatttc 17581797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 25343686 - 25343805
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacg----ttttatgaaatctgtttttaat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||| |  ||||||||||| |    | ||||||||| ||||||||||    
T  25343686 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctattgatttacgattgttgaacatgcatgtattatgaaatttgtttttaat 25343785  T
Q  97 taagacctaaatttccaaca 116  Q
    |||||  |||||||||||||    
T  25343786 taagatataaatttccaaca 25343805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21770655 - 21770546
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||| | |||||||||||||||||| ||||| |  || ||| |  |||||||| || || ||||||||||||||||||||||||    
T  21770655 atgtcgtagatccgttcatatttatgttcaatgttttgtttacttcctctattaatttacgattgttgatcatgtattatgaaatctgtttttaattaag 21770556  T
Q  101 acctaaattt 110  Q
    ||||||||||    
T  21770555 acctaaattt 21770546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 6098060 - 6098158
Alignment:
Q  22 tcatgttcaatgttttgtttgcttccgcc-tttgattcataattgttg---aacacgttttatgaaatctgtttttaattaagacctaaatttccaaca 116  Q
    |||||||||||||||||| | |||||||  ||||||||||||||||||   |||| |||||||||||| ||||||| |||||||||||| ||| |||||    
T  6098060 tcatgttcaatgttttgtctacttccgctatttgattcataattgttgttgaacatgttttatgaaatttgttttttattaagacctaagttttcaaca 6098158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 6102693 - 6102803
Alignment:
Q  9 gatccgatcataatcatgttcaatgttttgtttgcttccgcc-tttgattcataattgttg---aacacgttttatgaaatctgtttttaattaagacct 104  Q
    |||||| ||||| | |||||||||||||||| |||||||||  |||||||||| |||||||   ||||  ||||||||||| ||||||| || |||||||    
T  6102693 gatccgttcatattgatgttcaatgttttgtctgcttccgctatttgattcatgattgttgttgaacatattttatgaaatatgttttttatgaagacct 6102792  T
Q  105 aaatttccaac 115  Q
    |||||||||||    
T  6102793 aaatttccaac 6102803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21783406 - 21783337
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaa 70  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  |||||| |  |||||||||    
T  21783406 atgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctattgatttactattgttgaa 21783337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21789629 - 21789560
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaa 70  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  |||||| |  |||||||||    
T  21789629 atgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctattgatttactattgttgaa 21789560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 34603421 - 34603337
Alignment:
Q  7 tagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttt 92  Q
    |||||||||||||||| |||||||||| ||||||||||| |||  || |||||||||||||  ||| ||||||| |||| ||||||    
T  34603421 tagatccgatcataattatgttcaatgctttgtttgctt-cgctatttattcataattgttacacatgttttattaaatatgtttt 34603337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 34724698 - 34724614
Alignment:
Q  7 tagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttt 92  Q
    |||||||||||||||| |||||||||| ||||||||||| |||  || |||||||||||||  ||| ||||||| |||| ||||||    
T  34724698 tagatccgatcataattatgttcaatgctttgtttgctt-cgctatttattcataattgttacacatgttttattaaatatgtttt 34724614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28683042 - 28682928
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  28683042 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 28682944  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  28682943 acctaaatttccaaca 28682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 36750477 - 36750591
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  36750477 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgttttt-attaag 36750575  T
Q  101 acctaaatttccaaca 116  Q
    || |||||||||||||    
T  36750576 acttaaatttccaaca 36750591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35090746 - 35090637
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  35090746 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 35090648  T
Q  101 acctaaatttc 111  Q
    |||||||||||    
T  35090647 acctaaatttc 35090637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30965390 - 30965505
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| || ||||||||||| || ||||||||||||||||||||||||    
T  30965390 atgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatttatgattgttgaacatgtattatgaaatctgtttttaattaag 30965489  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||| ||||    
T  30965490 acctaaatttctaaca 30965505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31002439 - 31002554
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |  ||||||||||| || ||||||||||||||||||||||||    
T  31002439 atgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaag 31002538  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  31002539 acctaaatttccaaca 31002554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31008417 - 31008532
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |  ||||||||||| || ||||||||||||||||||||||||    
T  31008417 atgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaag 31008516  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  31008517 acctaaatttccaaca 31008532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35084773 - 35084665
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  35084773 atgtcgtagatccgatcataatcattttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 35084675  T
Q  101 acctaaattt 110  Q
    ||||||||||    
T  35084674 acctaaattt 35084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 35438806 - 35438693
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||| |||||||||||| ||||||  ||||||    
T  35438806 atgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgattcataactgttgaacatgttttatgaaatttgtttt--attaag 35438709  T
Q  101 acctaaatttccaaca 116  Q
     |||||||||||||||    
T  35438708 gcctaaatttccaaca 35438693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 13456162 - 13456276
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||||||| || ||||||||||| ||| | ||||||    
T  13456162 atgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttat-attaag 13456260  T
Q  101 acctaaatttccaaca 116  Q
    ||||| ||||||||||    
T  13456261 acctatatttccaaca 13456276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 13462103 - 13462217
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||||||| || ||||||||||| ||| | ||||||    
T  13462103 atgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttat-attaag 13462201  T
Q  101 acctaaatttccaaca 116  Q
    ||||| ||||||||||    
T  13462202 acctatatttccaaca 13462217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13149783 - 13149674
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |  ||||||||||| || ||||||||||||||| | ||||||    
T  13149783 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttat-attaag 13149685  T
Q  101 acctaaatttc 111  Q
    |||||||||||    
T  13149684 acctaaatttc 13149674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 11048646 - 11048536
Alignment:
Q  5 cgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacct 104  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| | ||||||| ||||||||    
T  11048646 cgtatatccaatcataatcatgttcaatgttttgtttgcttcagctattgattcataattgttggacatgttttatgaaatttatttttaa-taagacct 11048548  T
Q  105 aaatttccaaca 116  Q
    ||||||||||||    
T  11048547 aaatttccaaca 11048536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 44716902 - 44716787
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgtttt-gtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaa 99  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||  |||||| ||||  |||||||| ||||||||| |||||||||| |||||    
T  44716902 atgtcgtagatccgatcataatcatgttcaatgttttcttttgcttccgctattgattgataaccgttgaacatgttttatgatatctgttttt-attaa 44716804  T
Q  100 gacctaaatttccaaca 116  Q
    |||||||||||| ||||    
T  44716803 gacctaaatttctaaca 44716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 23343623 - 23343738
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||  ||||||| |||| |||||||| |||||||||||||| || || || |||    
T  23343623 atgtcgtagattcgttcatattcatgttcaatgttttgtttgcttccgctgttgattcgtaatcgttgaacatgttttatgaaatctcttctt-atcaag 23343721  T
Q  101 acctaaatttccaacac 117  Q
    | ||||||||| |||||    
T  23343722 atctaaatttcaaacac 23343738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 29833278 - 29833384
Alignment:
Q  9 gatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaat 108  Q
    |||||||||||||| ||||||||| |||| |||| |||||   |||||||| |||| || |||| || ||||||||||| ||| | ||| | ||||||||    
T  29833278 gatccgatcataattatgttcaatattttatttgtttccgttattgattcacaattattaaacatgtattatgaaatctctttat-atttatacctaaat 29833376  T
Q  109 ttccaaca 116  Q
    ||| ||||    
T  29833377 ttctaaca 29833384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31651667 - 31651703
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgtttt 37  Q
    ||||| || ||||||||||||||||||||||||||||    
T  31651667 atgtcataaatccgatcataatcatgttcaatgtttt 31651703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 28964930 - 28965042
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||   ||||||||||| |||||||||||||||||||||||||||    
T  28964930 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattc---attgttgaacatgttttatgaaatctgtttttaattaag 28965026  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  28965027 acctaaatttccaaca 28965042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10244431 - 10244317
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  10244431 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 10244333  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  10244332 agctaaatttccaaca 10244317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17055890 - 17055775
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||||| |||||||| ||||||    
T  17055890 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatattttatgaaaactgttttttattaag 17055791  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||| ||||    
T  17055790 acctaaatttcgaaca 17055775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 49151674 - 49151788
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  49151674 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 49151772  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  49151773 acctaaatttccaaca 49151788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 49157741 - 49157855
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  49157741 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 49157839  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  49157840 acctaaatttccaaca 49157855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 55003509 - 55003398
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  55003509 atgtcgtagatccgatcataatcatgttcaatgttttatttgcttctgctattgattcataattgttgaacatgttttatgaaatctgttttt-attaag 55003411  T
Q  101 acctaaatttcca 113  Q
    |||||||||||||    
T  55003410 acctaaatttcca 55003398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10238309 - 10238195
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  10238309 atgtcgtagatctgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 10238211  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  10238210 agctaaatttccaaca 10238195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10760747 - 10760633
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  |||||| |||||||||||||| || ||||||||||||||||||| ||||    
T  10760747 atgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgatttataattgttgaacatgtattatgaaatctgtttttaa-taag 10760649  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  10760648 acctaaatttccaaca 10760633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 11839822 - 11839708
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || | ||||||||||||| | ||||||    
T  11839822 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtatcatgaaatctgtttat-attaag 11839724  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  11839723 acctaaatttccaaca 11839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 11846160 - 11846046
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| || |||| ||||||| |||||||||||    
T  11846160 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattataaaatctg-ttttaattaag 11846062  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  11846061 acctaaatttccaaca 11846046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 48128144 - 48128028
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||| ||||||||||||||| ||| ||    
T  48128144 atgtcgtagaaccgatcataatcatgttcaatgttttgtttgtttccgctattgattcataattgttgaacatgtttcatgaaatctgttttt-attgag 48128046  T
Q  101 acctaaatttccaacaca 118  Q
    ||||||||||||||||||    
T  48128045 acctaaatttccaacaca 48128028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10766968 - 10766854
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| || ||||||||| ||||||||| ||||    
T  10766968 atgtcgtagatccggtcataatcatgttcaatgttttgtttgcttccgctgttgatttataattgttgaacatgtattatgaaatttgtttttaa-taag 10766870  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  10766869 acctaaatttccaaca 10766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 30051199 - 30051085
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  30051199 atgtcgtagatctgattataatcatgttcaatattttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgttttt-attaag 30051101  T
Q  101 acctaaatttccaaca 116  Q
    |||||||||| |||||    
T  30051100 acctaaattttcaaca 30051085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8331849 - 8331963
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| ||||||| |||||| ||| | ||||||    
T  8331849 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttataaaatctatttat-attaag 8331947  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  8331948 agctaaatttccaaca 8331963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 53069151 - 53069043
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||| ||||||| |||||||||||| ||||||    
T  53069151 atgtcatagatccgatcataatcatgttcaatgttttgtttgcttccgctatcgatttataattgttgaacatgttttataaaatctgttttt-attaag 53069053  T
Q  101 acctaaattt 110  Q
    ||||||||||    
T  53069052 acctaaattt 53069043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17593379 - 17593268
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |  |||||||||||  | ||||||||| | ||||||||||||    
T  17593379 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcgattgatttacgattgttgaacatctattatgaaatatatttttaattaag 17593280  T
Q  101 acctaaatttcc 112  Q
    ||||||||||||    
T  17593279 acctaaatttcc 17593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 42191317 - 42191203
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||||||| || ||||||||||| ||| | ||||||    
T  42191317 atgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttat-attaag 42191219  T
Q  101 acctaaatttccaaca 116  Q
    ||||| ||||||||||    
T  42191218 acctatatttccaaca 42191203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 42197259 - 42197145
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||||||| || ||||||||||| ||| | ||||||    
T  42197259 atgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctattgattcacaattgttgaacatgtattatgaaatctatttat-attaag 42197161  T
Q  101 acctaaatttccaaca 116  Q
    ||||| ||||||||||    
T  42197160 acctatatttccaaca 42197145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 38449160 - 38449048
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| || ||||||||||   |||  ||||||    
T  38449160 atgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatc---tttatattaag 38449064  T
Q  101 acctaaatttccaaca 116  Q
    ||| ||||||||||||    
T  38449063 accgaaatttccaaca 38449048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 38455647 - 38455535
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| || ||||||||||   |||  ||||||    
T  38455647 atgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatgaaatc---tttatattaag 38455551  T
Q  101 acctaaatttccaaca 116  Q
    ||| ||||||||||||    
T  38455550 accgaaatttccaaca 38455535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 24643635 - 24643534
Alignment:
Q  15 atcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttt--tatgaaatctgtttttaattaagacctaaatttcc 112  Q
    ||||||||||||||||||||||| ||| |||||||  ||||||||||| ||||||||| ||||  |||||| | ||||||  ||||||||||||||||||    
T  24643635 atcataatcatgttcaatgttttatttacttccgctattgattcataaatgttgaacatgttttatatgaagtttgtttt--attaagacctaaatttcc 24643538  T
Q  113 aaca 116  Q
    ||||    
T  24643537 aaca 24643534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34300559 - 34300607
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgc 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34300559 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgc 34300607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 13445142 - 13445227
Alignment:
Q  30 aatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaatttccaaca 116  Q
    |||||||| |||||||||||  |||||| |||||||||||||| ||| ||| |||||| ||||| ||| ||||||||||||| ||||    
T  13445142 aatgttttatttgcttccgctattgatttataattgttgaacatgttctatcaaatctattttt-atttagacctaaatttctaaca 13445227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 46656749 - 46656839
Alignment:
Q  4 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgttttta 94  Q
    ||||||||||||||||||| || || |||||||| ||| |||| ||  || ||||||| || ||||||| |||||||||||| ||||||||    
T  46656749 tcgtagatccgatcataattatattgaatgttttatttacttcagctattaattcatatttattgaacatgttttatgaaatatgttttta 46656839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 50306251 - 50306366
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  50306251 atgtcgtagatccgattataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-attaag 50306349  T
Q  101 acctaaatttccaacac 117  Q
    |||||||||||||||||    
T  50306350 acctaaatttccaacac 50306366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1078286 - 1078400
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| || ||||||||||||||| | ||||||    
T  1078286 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattaataattgttgaacatgtattatgaaatctgtttat-attaag 1078384  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  1078385 acctaaatttccaaca 1078400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 34740048 - 34740158
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||| |||||||||||||||||| | ||||||    
T  34740048 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgatgaacatgttttatgaaatctgtttat-attaag 34740146  T
Q  101 acctaaatttcc 112  Q
    ||||||||||||    
T  34740147 acctaaatttcc 34740158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 25387601 - 25387487
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||| |||||||||||||||||| | ||||||    
T  25387601 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcatatttgttgaacatgttttatgaaatctgtttat-attaag 25387503  T
Q  101 acctaaatttccaaca 116  Q
    | ||| ||||||||||    
T  25387502 atctatatttccaaca 25387487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 25381629 - 25381517
Alignment:
Q  4 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||| || ||||||||||||||| | |||||||||    
T  25381629 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcatagttgttgaacatgtattatgaaatctgtttat-attaagacc 25381531  T
Q  104 taaatttccaacac 117  Q
    || |||||||||||    
T  25381530 tatatttccaacac 25381517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 44410072 - 44410186
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||||||| | ||||    
T  44410072 atgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgttttt-agtaag 44410170  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  44410171 acctaaatttccaaca 44410186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31058106 - 31058220
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |  ||||||||||| || ||||||||||||||| | ||||||    
T  31058106 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttat-attaag 31058204  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||| ||||    
T  31058205 acctaaatttctaaca 31058220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 24963795 - 24963685
Alignment:
Q  5 cgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacct 104  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||| | |||||||| |||||||||||||||||||| ||||||| ||    
T  24963795 cgtagatccgttcatattcatgttcaatgttttgtttgcttccgctattgattcatattcgttgaacatgttttatgaaatctgttttt-attaagatct 24963697  T
Q  105 aaatttccaaca 116  Q
    |||||| |||||    
T  24963696 aaattttcaaca 24963685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 27955223 - 27955336
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||| || |||| |||||||||||||||||||| ||||||    
T  27955223 atgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt-atgattattaaacatgttttatgaaatctgttttt-attaag 27955320  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||| ||||    
T  27955321 acctaaatttctaaca 27955336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 24926851 - 24926738
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||| | ||||||||||||||| ||||||||||  |||||||||||| |||||||| |||||||| ||||||||||| ||||||    
T  24926851 atgtcgtagatccgttcatattaatgttcaatgttttggttgcttccgctattgattcataatcgttgaacatgttttatg-aatctgttttt-attaag 24926754  T
Q  101 acctaaatttccaaca 116  Q
    |||||||||| |||||    
T  24926753 acctaaattttcaaca 24926738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12183681 - 12183562
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcata-----attgttgaacacgttttatgaaatctgtttttaa 95  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||| |  ||||||||||     |||||||||||  ||||||||||||| ||||| |    
T  12183681 atgtcgtagatccaatcataattatgttcaatattttgtttgcttccactattgattcataattatattgttgaacatattttatgaaatctattttt-a 12183583  T
Q  96 ttaagacctaaatttccaaca 116  Q
    |||||| ||||||||||||||    
T  12183582 ttaagaactaaatttccaaca 12183562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31051606 - 31051687
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatga 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| |  ||||||||||| || ||||||    
T  31051606 atgtcgtagatccaatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatga 31051687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 38152052 - 38151981
Alignment:
Q  21 atcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttt 92  Q
    |||||||||||| ||||||||||||||||  |||||| |||||||||||||| |||||||||||||| ||||    
T  38152052 atcatgttcaatattttgtttgcttccgctgttgattaataattgttgaacatgttttatgaaatctatttt 38151981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8092943 - 8092898
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttc 46  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  8092943 atgtcatagatccgatcataatcatgttcaatgttttatttgcttc 8092898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28525483 - 28525369
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  28525483 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 28525385  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  28525384 acctaaatttccaaca 28525369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28531579 - 28531465
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||| | ||||||    
T  28531579 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgtttat-attaag 28531481  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  28531480 acctaaatttccaaca 28531465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 32097058 - 32096943
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| |  ||||||||||| || ||||||||||||||||||||||||    
T  32097058 atgtcgtagatcctatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaag 32096959  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  32096958 acctaaatttccaaca 32096943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 32094257 - 32094140
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| |  ||||||||||| || |||| |||||||||||||||||||    
T  32094257 atgtcgtagatcctatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattataaaatctgtttttaattaag 32094158  T
Q  101 acctaaatttccaacaca 118  Q
    ||||||||||||||||||    
T  32094157 acctaaatttccaacaca 32094140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7389645 - 7389531
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||| ||||| | ||||||    
T  7389645 atgtcgtggatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatttgtttat-attaag 7389547  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  7389546 acctaaatttccaaca 7389531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12686276 - 12686162
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||| | || |||    
T  12686276 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttatgaaatctgtttat-atcaag 12686178  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  12686177 agctaaatttccaaca 12686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12692378 - 12692264
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||| | || |||    
T  12692378 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgttttatgaaatctgtttat-atcaag 12692280  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  12692279 agctaaatttccaaca 12692264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24054397 - 24054502
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||| |||||||||||||||||||| ||||||    
T  24054397 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatagatttataattgttgaacatgttttatgaaatctgttttt-attaag 24054495  T
Q  101 acctaaa 107  Q
    |||||||    
T  24054496 acctaaa 24054502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 30384469 - 30384359
Alignment:
Q  7 tagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgt-ttttaattaagaccta 105  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||    
T  30384469 tagatccgatcataatcgtgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttttttattaaaaccta 30384370  T
Q  106 aatttccaaca 116  Q
    |||||||||||    
T  30384369 aatttccaaca 30384359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 41297339 - 41297453
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||| || ||||||||||| ||| | ||||||    
T  41297339 atgtcgtagatccgatcataattatgttcaatgttttgtttgcttctgctattgattcataattgttgaacatgtattatgaaatctctttat-attaag 41297437  T
Q  101 acctaaatttccaaca 116  Q
    ||| ||||||||||||    
T  41297438 acccaaatttccaaca 41297453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 16215268 - 16215157
Alignment:
Q  4 tcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacc 103  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| | || ||||||||||||||||| || ||||||    
T  16215268 tcgtagatccaatcataatcatgttaaatgttttgtttgcttccgctattgattcataattgttgaatatgtgttatgaaatctgttttt-ataaagacc 16215170  T
Q  104 taaatttccaaca 116  Q
    |||||||| ||||    
T  16215169 taaatttctaaca 16215157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 14610211 - 14610321
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctg-tttttaattaa 99  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||||||  || |||||||||||||||||| ||||||||||||||| |||||  ||||    
T  14610211 atgtcgtaaatccgatcataatcatgttcaatggtttatttgcttccgctattaattcataattgttgaacatgttttatgaaatctgtttttttgttaa 14610310  T
Q  100 gacctaaattt 110  Q
    |||||||||||    
T  14610311 gacctaaattt 14610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19059861 - 19059747
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| | ||| ||||||| ||| |||||||||||||| |   ||||| ||||| |||||| |||||||||||||| ||||||| ||||||    
T  19059861 atgtcgtagatccgtttatattcatgtttaatattttgtttgcttcccctaatgatttataatcgttgaatacgttttatgaaatatgttttt-attaag 19059763  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  19059762 acctaaatttccaaca 19059747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 19066204 - 19066091
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||| ||||| | ||||||||||||||||||||   ||||| ||||| |||||||| | |||||||||| ||||||| ||||||    
T  19066204 atgtcgtagatccgttcatattcatgcttaatgttttgtttgcttccgctaatgatttataatcgttgaacatggtttatgaaatatgttttt-attaag 19066106  T
Q  101 acctaaatttccaac 115  Q
    || ||||||||||||    
T  19066105 acttaaatttccaac 19066091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 30772353 - 30772460
Alignment:
Q  9 gatccgatcataatcatgttcaatgtttt-gtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaa 107  Q
    |||||||||||||||||||||| |||||| |||||||||| |  || |||||||||| ||||||| |||||||||||| | ||||| ||||||| |||||    
T  30772353 gatccgatcataatcatgttcattgtttttgtttgcttccactgtttattcataattattgaacatgttttatgaaatttattttt-attaagaactaaa 30772451  T
Q  108 tttccaaca 116  Q
    |||||||||    
T  30772452 tttccaaca 30772460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 26316889 - 26316796
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgttttta 94  Q
    ||||| ||||||| |||||| | |||||||||||||| ||||||||| |  || ||| | |||| ||||||| |||||||||||| ||||||||    
T  26316889 atgtcctagatccaatcatattaatgttcaatgttttttttgcttccactattaatttaaaattattgaacatgttttatgaaatatgttttta 26316796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 26509926 - 26510002
Alignment:
Q  15 atcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgttttta 94  Q
    |||||||| |||||||||||||||||||||||| |   |  ||||||||  ||||||| |||||||||||||||||||||    
T  26509926 atcataattatgttcaatgttttgtttgcttccac---tatttcataatgattgaacatgttttatgaaatctgttttta 26510002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 8706508 - 8706454
Alignment:
Q  55 attcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaattt 110  Q
    ||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  8706508 attcataattgttgaacatattttatgaaatctattttt-attaagacctaaattt 8706454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37896395 - 37896286
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||  |||| ||| |||| ||  ||||||||| ||| || || | | |||||||||| |  ||||| |||||    
T  37896395 atgtcgtagatccgatcataatcatgttcaacattttatttacttctgctgttgattcatgattattaaatatgatttatgaaat-tcgttttatttaag 37896297  T
Q  101 acctaaatttc 111  Q
    |||||| ||||    
T  37896296 acctaattttc 37896286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 20500200 - 20500231
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaat 32  Q
    ||||||||||||||||||||||||||||||||    
T  20500200 atgtcgtagatccgatcataatcatgttcaat 20500231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28542300 - 28542336
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgtttt 37  Q
    ||||||||| | |||||||||||||||||||||||||    
T  28542300 atgtcgtagtttcgatcataatcatgttcaatgtttt 28542336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 5597 - 5711
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | || |||    
T  5597 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-atcaag 5695  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||||||||    
T  5696 agctaaatttccaaca 5711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 24288049 - 24288161
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||| |||   ||||||    
T  24288049 atgtcgtagatacgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctattt---attaag 24288145  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  24288146 acctaaatttccaaca 24288161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33458364 - 33458248
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |  |||||||||||  | ||||||||||||||||||||||||    
T  33458364 atgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatttacgattgttgaacatatattatgaaatctgtttttaattaag 33458265  T
Q  101 acctaaatttccaacac 117  Q
    |||||||||||||||||    
T  33458264 acctaaatttccaacac 33458248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10733343 - 10733229
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||||||||||||||||| |  |||||    
T  10733343 atgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-gttaag 10733245  T
Q  101 acctaaatttccaaca 116  Q
    | |||||| |||||||    
T  10733244 agctaaatgtccaaca 10733229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10739436 - 10739322
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||| |  |||||    
T  10739436 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctattgattcataattgttgaacatgttttatgaaatctgtttat-gttaag 10739338  T
Q  101 acctaaatttccaaca 116  Q
    | |||||| |||||||    
T  10739337 agctaaatgtccaaca 10739322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10947112 - 10946998
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||||||||||||||||| |  |||||    
T  10947112 atgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttat-gttaag 10947014  T
Q  101 acctaaatttccaaca 116  Q
    | |||||| |||||||    
T  10947013 agctaaatgtccaaca 10946998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10953205 - 10953091
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||| |  |||||    
T  10953205 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctattgattcataattgttgaacatgttttatgaaatctgtttat-gttaag 10953107  T
Q  101 acctaaatttccaaca 116  Q
    | |||||| |||||||    
T  10953106 agctaaatgtccaaca 10953091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26956926 - 26956812
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||||||  |||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  26956926 atgtcgtagatccgttcatacttatgttcaatgttttatttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgttttt-attaag 26956828  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  26956827 acctaaatttccaaca 26956812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26963438 - 26963324
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||| ||||||| ||||||    
T  26963438 atgtcgtagatccgttcatacttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatgaaatttgttttt-attaag 26963340  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  26963339 acctaaatttccaaca 26963324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 50168655 - 50168769
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||| |||||| |||| ||||||    
T  50168655 atgtcgtatattcgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacgtgttttatgtaatctggtttt-attaag 50168753  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  50168754 acctaaatttccaaca 50168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 4632869 - 4632963
Alignment:
Q  21 atcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaatttccaaca 116  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  4632869 atcatgttcaatgttttgtttgcttccgctgttgattaataattgttgaacatgttttatgaaatctgttttt-attaagacctaaatttccaaca 4632963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 6257302 - 6257188
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||||||||||| || ||||||||||| ||| | ||||||    
T  6257302 atgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctgttgatttatgattgttgaacatgtattatgaaatctatttat-attaag 6257204  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||||||||    
T  6257203 acctaaatttccaaca 6257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 48161021 - 48161132
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||   ||||||||  ||||||||||||| ||||| ||||||    
T  48161021 atgtcgtagatccgatcataattatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctattttt-attaag 48161116  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||| ||||    
T  48161117 acctaaatttctaaca 48161132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 48167240 - 48167351
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||   ||||||||  ||||||||||||| ||||| ||||||    
T  48167240 atgtcgtagatccgatcataattatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctattttt-attaag 48167335  T
Q  101 acctaaatttccaaca 116  Q
    ||||||||||| ||||    
T  48167336 acctaaatttctaaca 48167351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 49976649 - 49976763
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||  | ||||||||||||||||| | |||||||||||| ||||||| |||||     
T  49976649 atgtcgtagatccgatcataatcatattcaatgttttgtttgctttcgctatcgattcataattgttgaatatgttttatgaaatttgttttt-attaaa 49976747  T
Q  101 acctaaatttccaaca 116  Q
    | ||||||||| ||||    
T  49976748 atctaaatttctaaca 49976763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3769629 - 3769710
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatga 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||| |||||||  ||||||||    
T  3769629 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttaaattattgattcataattattgaacatattttatga 3769710  T

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Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 33461490 - 33461380
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| |  |||||| |  |||||||||||     ||| |||| ||||||||||||||    
T  33461490 atgtcgtaaatccgaccataatcatgttcaatgttttgtttgcttccactattgatttacgattgttgaaca-----tataaaatatgtttttaattaag 33461396  T
Q  101 acctaaatttccaaca 116  Q
    |  |||||||| ||||    
T  33461395 atttaaatttctaaca 33461380  T

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Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 34308144 - 34308060
Alignment:
Q  25 tgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaatttc 111  Q
    |||||||| |||||| |||||||||  ||||||||||||| ||||||| ||||||| |||||||||||  |||||||| ||||||||    
T  34308144 tgttcaatattttgtatgcttccgctattgattcataattattgaacatgttttataaaatctgtttt--attaagacgtaaatttc 34308060  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19686425 - 19686341
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaat 85  Q
    |||| ||||||||||| ||||| | ||||||| |||||||||||||||   |||||| ||| || ||||||| ||||||||||||    
T  19686425 atgttgtagatccgatgataattacgttcaatattttgtttgcttccgttattgatttatagttattgaacatgttttatgaaat 19686341  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 55473230 - 55473133
Alignment:
Q  10 atccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaagacctaaatt 109  Q
    |||| ||||||||||| |||||| |||| |||||||||||  |||||   | ||| |||||||  ||||||||||| ||||| | |||||||||||||||    
T  55473230 atccaatcataatcatattcaatattttatttgcttccgctattgat---ttattattgaacatattttatgaaatttgtttct-attaagacctaaatt 55473135  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50427438 - 50427483
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttcc 47  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||    
T  50427438 atgtcgtacatccgatcataatcat-ttcaatgttttgattgcttcc 50427483  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4632453 - 4632482
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttca 30  Q
    ||||||||||||||||||||||||||||||    
T  4632453 atgtcgtagatccgatcataatcatgttca 4632482  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 50156043 - 50156100
Alignment:
Q  37 tgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgttttta 94  Q
    ||||| |||||||  ||||||||||||||||||||| |||||||  |||||| |||||    
T  50156043 tgtttacttccgctattgattcataattgttgaacatgttttatataatctggtttta 50156100  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44831709 - 44831661
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgc 49  Q
    ||||||||||| |||||||| |||||||||||| ||  |||||||||||    
T  44831709 atgtcgtagattcgatcatattcatgttcaatgattaatttgcttccgc 44831661  T

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Target: scaffold0363 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 716 - 604
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||   ||| |||| |||||||||||||||||||| ||||||    
T  716 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttaaacatgttttatgaaatctgttttt-attaag 621  T
Q  101 acctaaatttccaacac 117  Q
    |||||||||||||||||    
T  620 acctaaatttccaacac 604  T

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Target: scaffold0012 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 172987 - 172873
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||| |||||| | ||||||    
T  172987 atgtcgtagatccgatcataatcattttcaatgttttgtttgcttccgctattgattcataattgtagaacatgttttatgaaacctgtttat-attaag 172889  T
Q  101 acctaaatttccaaca 116  Q
    |||||||||| |||||    
T  172888 acctaaattttcaaca 172873  T

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Target: scaffold0208 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 6600 - 6699
Alignment:
Q  16 tcataatcatgttcaatgttttgtttgcttccgcctttgattcat-aattgttgaacacgttttatgaaatctgtttttaattaagacctaaatttccaa 114  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| | |||||||||| ||||| | ||||||| ||||||||||||    
T  6600 tcataatcatgttcaatgttttgtttgcttccgctattgattcataaattgttgaacatggtttatgaaat-tgtttat-attaagagctaaatttccaa 6697  T

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Target: scaffold0208; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12458 - 12572
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcat-aattgttgaacacgttttatgaaatctgtttttaattaa 99  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||  ||||||||| |||||||||| | | |||||||||| ||||| | |||||    
T  12458 atgtcgtagattcgatcataattatgttcaatgttttatttgcttccgctattgattcataaattgttgaatatggtttatgaaat-tgtttat-attaa 12555  T
Q  100 gacctaaatttccaaca 116  Q
    || ||||||||||||||    
T  12556 gagctaaatttccaaca 12572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38490 - 38600
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||| |  ||||||  ||||  ||||||| || |||||||||||| ||||| ||||     
T  38490 atgttgtagatccgatcataactatgttcaatgttttgtttgcttccactgttgatttctaatgattgaacatgtcttatgaaatctggttttatttaa- 38588  T
Q  101 acctaaatttcc 112  Q
     |||||||||||    
T  38589 tcctaaatttcc 38600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1150 - 1261
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttttatgaaatctgtttttaattaag 100  Q
    ||||||| ||||||||||||||||| |  ||    |||||||||| ||   |||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  1150 atgtcgttgatccgatcataatcatatctaaa---ttgtttgctttcgatattgattcataatggttgaacatgttttatgaaatctgttttt-attaag 1245  T
Q  101 acctaaatttccaaca 116  Q
    | || |||||||||||    
T  1246 atctgaatttccaaca 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5985 - 6061
Alignment:
Q  1 atgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcctttgattcataattgttgaacacgttt 77  Q
    |||||||||||||||||||| ||||||||||||||||||||  | ||||  |||||| |||||| ||||||| ||||    
T  5985 atgtcgtagatccgatcatattcatgttcaatgttttgtttaatgccgctattgattaataattattgaacatgttt 6061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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