View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_high_45 (Length: 207)

Name: NF15231_high_45
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_high_45
NF15231_high_45
[»] chr6 (4 HSPs)
chr6 (12-188)||(9127860-9128036)
chr6 (17-77)||(33415856-33415916)
chr6 (132-169)||(30031498-30031535)
chr6 (130-170)||(24698858-24698898)
[»] chr1 (6 HSPs)
chr1 (131-168)||(45168483-45168520)
chr1 (130-169)||(25715327-25715366)
chr1 (130-169)||(44751726-44751765)
chr1 (140-169)||(27847811-27847840)
chr1 (128-169)||(52561588-52561629)
chr1 (128-160)||(52292290-52292322)
[»] chr8 (3 HSPs)
chr8 (130-169)||(10668498-10668537)
chr8 (133-169)||(26055663-26055699)
chr8 (132-168)||(43903921-43903957)
[»] chr7 (1 HSPs)
chr7 (130-169)||(12966258-12966297)
[»] chr4 (6 HSPs)
chr4 (130-169)||(6957840-6957879)
chr4 (130-169)||(26024851-26024890)
chr4 (130-169)||(31961267-31961306)
chr4 (130-171)||(8327141-8327182)
chr4 (132-160)||(31339775-31339803)
chr4 (130-170)||(49416948-49416988)
[»] chr2 (3 HSPs)
chr2 (130-165)||(10516750-10516785)
chr2 (132-169)||(43970022-43970059)
chr2 (130-162)||(12882046-12882078)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 9127860 - 9128036
Alignment:
Q  12 tgagatgaaatttttgaagagcttgttgatgatatagccatgcaagtggctgaatgccctcaagtacacgataggttgatcaaggttgcatttcacattt 111  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9127860 tgaggtgaagtttttaaagagcttgttgatgatatagccatgcaagtggctgaatgccctcaagtacacgataggttgatcaaggttgcatttcacattt 9127959  T
Q  112 tcctattgtttttacaaccaacaacaagcaagccttatcccactaagtgagatcggcttactttgagtgtgtcatcg 188  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9127960 tcctattgtttttacaaccaacagcaagcaagccttatcccactaagtgagatcggcttactttgagtgcgtcatcg 9128036  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33415916 - 33415856
Alignment:
Q  17 tgaaatttttgaagagcttgttgatgatatagccatgcaagtggctgaatgccctcaagta 77  Q
    |||||||||  |||||||||| |||||||||||||||||||||||||  ||||| ||||||    
T  33415916 tgaaattttcaaagagcttgtcgatgatatagccatgcaagtggctgcgtgcccccaagta 33415856  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 30031535 - 30031498
Alignment:
Q  132 acaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  30031535 acaacaaccaagccttatcccactaagtgaggtcggct 30031498  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 24698858 - 24698898
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggctt 170  Q
    ||||||||| |||||||||||||||||| || |||||||||    
T  24698858 caacaacaaccaagccttatcccactaaatgggatcggctt 24698898  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 45168483 - 45168520
Alignment:
Q  131 aacaacaagcaagccttatcccactaagtgagatcggc 168  Q
    |||||||| |||||||||||||||||||||||||||||    
T  45168483 aacaacaaacaagccttatcccactaagtgagatcggc 45168520  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 25715327 - 25715366
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  25715327 caacaacaaccaagccttatcccactaagtgaggtcggct 25715366  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 44751765 - 44751726
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  44751765 caacaacaaccaagccttatcccactaagtgaggtcggct 44751726  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 27847811 - 27847840
Alignment:
Q  140 caagccttatcccactaagtgagatcggct 169  Q
    ||||||||||||||||||||||||||||||    
T  27847811 caagccttatcccactaagtgagatcggct 27847840  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 52561588 - 52561629
Alignment:
Q  128 accaacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||||| ||||||||||||||||||||| | ||||||    
T  52561588 accaacaacaaccaagccttatcccactaagtggggtcggct 52561629  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 52292322 - 52292290
Alignment:
Q  128 accaacaacaagcaagccttatcccactaagtg 160  Q
    ||||||||||| |||||||||||||||||||||    
T  52292322 accaacaacaaccaagccttatcccactaagtg 52292290  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 10668498 - 10668537
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  10668498 caacaacaaccaagccttatcccactaagtgaggtcggct 10668537  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 26055699 - 26055663
Alignment:
Q  133 caacaagcaagccttatcccactaagtgagatcggct 169  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  26055699 caacaaccaagccttatcccactaagtgggatcggct 26055663  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 43903921 - 43903957
Alignment:
Q  132 acaacaagcaagccttatcccactaagtgagatcggc 168  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  43903921 acaacaaccaagccttatcccactaagtgaggtcggc 43903957  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 12966297 - 12966258
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  12966297 caacaacaaccaagccttatcccactaagtgggatcggct 12966258  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 6957879 - 6957840
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  6957879 caacaacaaccaagccttatcccactaagtgggatcggct 6957840  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 26024851 - 26024890
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  26024851 caacaacaaccaagccttatcccactaagtgaggtcggct 26024890  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 31961267 - 31961306
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  31961267 caacaacaaccaagccttatcccactaagtgaggtcggct 31961306  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 8327182 - 8327141
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggctta 171  Q
    ||||||||| ||||||||||||||||||||| | ||||||||    
T  8327182 caacaacaaccaagccttatcccactaagtggggtcggctta 8327141  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 31339803 - 31339775
Alignment:
Q  132 acaacaagcaagccttatcccactaagtg 160  Q
    |||||||||||||||||||||||||||||    
T  31339803 acaacaagcaagccttatcccactaagtg 31339775  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 49416988 - 49416948
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatcggctt 170  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  49416988 caacaacaaccaagccttatcccactaagtggggtcggctt 49416948  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 10516750 - 10516785
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgagatc 165  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10516750 caacaacaaccaagccttatcccactaagtgagatc 10516785  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 43970059 - 43970022
Alignment:
Q  132 acaacaagcaagccttatcccactaagtgagatcggct 169  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  43970059 acaacaaccaagccttatccaactaagtgagatcggct 43970022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 12882046 - 12882078
Alignment:
Q  130 caacaacaagcaagccttatcccactaagtgag 162  Q
    ||||||||| |||||||||||||||||||||||    
T  12882046 caacaacaaccaagccttatcccactaagtgag 12882078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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