View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_high_6 (Length: 431)
Name: NF15231_high_6
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 155 - 414
Target Start/End: Original strand, 33019384 - 33019643
Alignment:
| Q |
155 |
ttttcatcactcttggaggaaacaatcgtaacaaagacgcatcaactcactcttacctccaccggaaccctaacaacaacaactccgccactacccactc |
254 |
Q |
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| T |
33019384 |
ttttcatcactcatggaggaaacaatcgtaacaaagacgcatcaactcactcttaccttcaccggaaccctaacaacaacaactccgccactacccactc |
33019483 |
T |
|
| Q |
255 |
ttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaattcattagtttctga |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33019484 |
ttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatccttattcaacttcgatgcctctgcaagtcagtcaattcattagtttctga |
33019583 |
T |
|
| Q |
355 |
tccaaaatttgctaaaaaacatctttgcatgtcaaacactcaccatcgtctcatgctaag |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33019584 |
tccaaaatttgctaaaaaacatctttgcatgtcaaacactcgccatcgtctcatgctaag |
33019643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 188 - 414
Target Start/End: Original strand, 33025815 - 33026040
Alignment:
| Q |
188 |
aagacgcatcaactcactcttacctccaccggaaccctaacaacaacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgca |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33025815 |
aagacgcatcaactcactcttacctccaccggaaccctaactacaaccgctcatccactacctactcttccattcgatctcatcgctgaaattctatgca |
33025914 |
T |
|
| Q |
288 |
gactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtc |
387 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||| ||||||| |
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| T |
33025915 |
gactcccggtaaaactcctcattcaacttcgatgcctatgcaagtcattcaattcgttagtttctgatcc-aaattcgcttaaaaacatcttcgcatgtc |
33026013 |
T |
|
| Q |
388 |
aaacactcaccatcgtctcatgctaag |
414 |
Q |
| |
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|||||| ||||| |||||||||||||| |
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| T |
33026014 |
aaacacgcaccaccgtctcatgctaag |
33026040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 241 - 414
Target Start/End: Original strand, 33037364 - 33037537
Alignment:
| Q |
241 |
gccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaat |
340 |
Q |
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|||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| ||||| |
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| T |
33037364 |
gccactacccactcttccgtttgatctcgtcgctgaaattctatgcagacttccggtaaaactcctcattcaacttcgatgtctctgtaagtctatcaat |
33037463 |
T |
|
| Q |
341 |
tcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaaacactcaccatcgtctcatgctaag |
414 |
Q |
| |
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|| ||| |||||||||| ||||| ||||| ||||||||| ||||||||||||| | ||| | ||||||| |||| |
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| T |
33037464 |
tcgttaatttctgatcctaaattcgctaagaaacatcttcgcatgtcaaacacgcgccaccatctcatgttaag |
33037537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 342
Target Start/End: Original strand, 33023377 - 33023552
Alignment:
| Q |
160 |
atcactcttggaggaaacaatcgtaacaaagacgcatcaactcactcttacctccaccggaaccctaacaacaacaactccgccactacccactcttcca |
259 |
Q |
| |
|
||||||| |||||||||||||| |||||||| || ||| ||| ||||||| |||| ||||||||| | ||||||||||| | ||||||||| |
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| T |
33023377 |
atcactcatggaggaaacaatcacaacaaagatacaacaattcattcttacc-------gaactctaacaacatccgctccgccactaacaactcttcca |
33023469 |
T |
|
| Q |
260 |
ttcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaattc |
342 |
Q |
| |
|
|| |||||| | |||||||| || || ||| |||| || ||| ||||| ||||||||| ||| || |||||||| |||||||| |
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|
| T |
33023470 |
tttgatctccttgctgaaatcctttgtagaatccctgtgaaactcctccttcaacttcaatgtctttgcaagtccttcaattc |
33023552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 389
Target Start/End: Original strand, 27754828 - 27755003
Alignment:
| Q |
214 |
caccggaaccctaacaacaacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaa |
313 |
Q |
| |
|
||||| |||||||||| || | |||||||||| ||||||||| ||||||||||||||| || ||||| |||| || || || || | || ||||| |
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| T |
27754828 |
caccgaaaccctaacatcatctcctccgccacttcccactcttacattcgatctcatcgaagagattctgtgcatgcttcccgtgaagttactacttcaa |
27754927 |
T |
|
| Q |
314 |
cttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaa |
389 |
Q |
| |
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||| |||||||||| ||||| || ||||| ||| | || |||||||||||||| || ||||| ||| || |||||| |
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|
| T |
27754928 |
ctttgatgcctctgtaagtcctttaattctttaatctccgatccaaaatttgccaagaaacaccttcgcttgtcaa |
27755003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 7443820 - 7443711
Alignment:
| Q |
248 |
cccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaattcattag |
347 |
Q |
| |
|
||||||||||| ||||||||| || |||| ||||| ||||| || || || ||| | ||||| |||||||| |||||||| |||| |||||||| ||| |
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| T |
7443820 |
cccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctttaa |
7443721 |
T |
|
| Q |
348 |
tttctgatcc |
357 |
Q |
| |
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|||||||||| |
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|
| T |
7443720 |
tttctgatcc |
7443711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 389
Target Start/End: Original strand, 12217241 - 12217388
Alignment:
| Q |
242 |
ccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaatt |
341 |
Q |
| |
|
||||||||||| ||||| || ||||| | || |||||| | || ||| | |||||||| | |||||||| ||||| |||||||| ||||| ||||||| |
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|
| T |
12217241 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaatt |
12217340 |
T |
|
| Q |
342 |
cattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaa |
389 |
Q |
| |
|
| ||| | |||||||| |||||||| | ||||||||| || |||||| |
|
|
| T |
12217341 |
ctttaatctctgatcccaaatttgcagagaaacatcttcgcttgtcaa |
12217388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 9566582 - 9566517
Alignment:
| Q |
314 |
cttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatttgctaaaaaacatctt |
379 |
Q |
| |
|
||||| |||||||||||||| |||||||| | |||||||||||||||| || |||||||||||| |
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|
| T |
9566582 |
cttcggtgcctctgcaagtccttcaattctcttatttctgatccaaaattcgcaaaaaaacatctt |
9566517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 366
Target Start/End: Complemental strand, 7428439 - 7428315
Alignment:
| Q |
242 |
ccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaatt |
341 |
Q |
| |
|
||||||||||| ||||| || ||||| | || |||||| | || ||| | |||||||| | |||||||| ||||| |||||||| |||| ||||||| |
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|
| T |
7428439 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaatt |
7428340 |
T |
|
| Q |
342 |
cattagtttctgatccaaaatttgc |
366 |
Q |
| |
|
| ||| | |||||||| |||||||| |
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|
| T |
7428339 |
ctttaatctctgatcccaaatttgc |
7428315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 37754191 - 37754091
Alignment:
| Q |
239 |
ccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattca |
338 |
Q |
| |
|
|||||||| ||||||||||| ||||| | |||| |||||||||||||||||||| || || | ||| | ||||| || |||||||| ||||| |||| |
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|
| T |
37754191 |
ccgccactgcccactcttcctttcgaattggtcgcagaaattctatgcagactccctgtcaagttactcttacaactccggtgcctctgtaagtccttca |
37754092 |
T |
|
| Q |
339 |
a |
339 |
Q |
| |
|
| |
|
|
| T |
37754091 |
a |
37754091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 24418235 - 24418181
Alignment:
| Q |
309 |
ttcaacttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatt |
363 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||| | |||||||| ||||| |
|
|
| T |
24418235 |
ttcaacttcgctgtctctgcaagtccttcaattcattaatctctgatcccaaatt |
24418181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 48045868 - 48045901
Alignment:
| Q |
40 |
ccctctagaagtggaaacaaacatacacttagaa |
73 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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|
| T |
48045868 |
ccctctagaagtggaaccaaacatacacttagaa |
48045901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 25869541 - 25869469
Alignment:
| Q |
263 |
gatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcat |
335 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| | ||| ||||||| ||||| || ||| | |||||||||| |
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|
| T |
25869541 |
gatctcatcgctgaaatcctatgcagattccccatcaaattcctcatgcaactccgctgcatttgcaagtcat |
25869469 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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