View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15231_high_9 (Length: 412)
Name: NF15231_high_9
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 27694223 - 27694617
Alignment:
| Q |
11 |
cacagagatcaatattaaaatggcagcgaaaatgggtagtaccccgtacatcatagccattttgattttttggggttggttgggggatctgctcgactca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27694223 |
cacagagatcaatattaaaatggcagcgaaaatgggtagtaccccgtacatcatagccattttgattttttggggttggttgggggatctgctcgactca |
27694322 |
T |
|
| Q |
111 |
gtcagtcagtcatggctagctacctggactaattatctcacttggtgctgacttcaagtcaacca-------------ataatgcctcatcactcatttt |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27694323 |
gtcagtcagtcatggcta----cctggactaattatctcacttggtgctgacttcaagtcaaccacatgaaccgcccaataatgcctcatcactcatttt |
27694418 |
T |
|
| Q |
198 |
ttatccttttaaacccgcctgggcccacggtttggggacaaaagatttttagagtttggacaagaattaagaaataagtatctagtaactccgtaatccg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27694419 |
ttatccttttaaacccgcctgggcccacggtttagggacaaaagatttttagagtttggacaagaattaagaaataagtatctagtaactccgtaatccg |
27694518 |
T |
|
| Q |
298 |
tattaatcacgtatctatttaaaacaaaaacattaaatgtatctagtaattagcgatgacacttatataatatttagtgatctaatttgttacaaaaag |
396 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27694519 |
tattaatcacgtatatatttaaaacaaaaacattaaatgtatctagtaattagcgatgacacttatataatatttagtgatctaatttgttacaaaaag |
27694617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University