View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15231_low_1 (Length: 596)
Name: NF15231_low_1
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 57 - 584
Target Start/End: Original strand, 34584545 - 34585066
Alignment:
| Q |
57 |
ggataagtggactgtacaagaaaacaggacttaaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
156 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584545 |
ggataagtggactgttcaagaaaacaggacttaaaaag------tcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
34584638 |
T |
|
| Q |
157 |
tgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctattcagttgaagtgtgtttactcatacttgctgatgc |
256 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
34584639 |
tgtatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttttattcagttgaagagtgtttactcatacttgctgatgc |
34584738 |
T |
|
| Q |
257 |
ccattggtttgccttgctgatccacttttctattcatgtttccttgcttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagg |
356 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584739 |
ccatttgtttgccttgctgatccacttttctattcatgtttccttgcttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagg |
34584838 |
T |
|
| Q |
357 |
gttcaacaaagatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaa |
456 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584839 |
gttcaacaaagatgcaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaa |
34584938 |
T |
|
| Q |
457 |
tagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaag |
556 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34584939 |
tagtaatcagatcaatatttttcaacaatttttggcatcatactcagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaag |
34585038 |
T |
|
| Q |
557 |
catgatacctcgacgcattttttaccta |
584 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
34585039 |
catgatacctcgacgcattttttaccta |
34585066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 340 - 563
Target Start/End: Original strand, 34586432 - 34586641
Alignment:
| Q |
340 |
gtgaagttcttgaaagggttcaacaaagatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaattt |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || || |||||| ||||| ||| | || ||||||||||||||||||||||||||||| | |
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|
| T |
34586432 |
gtgaagttcttgaaagggttcaacaaagatgcaaatatt-----tgttcttga-tttcattaagcaac-taattaatattgtgaatggatatgaaaatgt |
34586524 |
T |
|
| Q |
440 |
gttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaa |
539 |
Q |
| |
|
||| |||||| |||| ||||| |||| |||| ||| | ||| || |||| ||| |||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
34586525 |
gttctcaactgaatcgatagttatcaaatcattatgt----acagttgttggtatcctactaaga---tgtaagaaaattacttcatgagcatgagtcaa |
34586617 |
T |
|
| Q |
540 |
catcgttacagtacaagcatgata |
563 |
Q |
| |
|
||| |||||| ||||||||||||| |
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|
| T |
34586618 |
cattgttacaatacaagcatgata |
34586641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 34586015 - 34586174
Alignment:
| Q |
89 |
aaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgaatatgttgtcaagagtcccttgaa----t |
184 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||| ||||||||| ||||||||| || | |
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|
| T |
34586015 |
aaaaagagggattcaaagtctgttatattttagttatataa-----------tttttactcttgcttttgtatatgttgt-tagagtccctgaaatcttt |
34586102 |
T |
|
| Q |
185 |
cttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtttactcatacttgctgat |
254 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
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|
| T |
34586103 |
cttttcttcaatagattgttttgaaattatcttttatgatcaggtgaagtgtgtttactcatacttgctgat |
34586174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 534
Target Start/End: Original strand, 34582916 - 34583022
Alignment:
| Q |
425 |
tggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttc |
524 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||| |||||||||| ||| |
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|
| T |
34582916 |
tggatatgaaaatgtgttctcaactaaatcaatagttatcagatcaatatttttgtacaaattttgtcatcatact---aagatgtaagaaaattaattc |
34583012 |
T |
|
| Q |
525 |
atgagcatga |
534 |
Q |
| |
|
| |||||||| |
|
|
| T |
34583013 |
acgagcatga |
34583022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 34583106 - 34583071
Alignment:
| Q |
18 |
tgacattggtcgccatggcaaaaattgagttaaaaa |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34583106 |
tgacattggtcgccatggcaaaaattgagttaaaaa |
34583071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 304 - 581
Target Start/End: Complemental strand, 27016225 - 27015951
Alignment:
| Q |
304 |
ttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagggttcaacaaagatgaaaatgttgttcttgatcttgactttcaataat |
403 |
Q |
| |
|
||||| ||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |
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|
| T |
27016225 |
ttggttcctctactaggacttgatgaatttttccaagtgaagttcttgaaagggttcaacaatgatgcaaatgttgttcttgatcttgacttgcaataat |
27016126 |
T |
|
| Q |
404 |
ctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaag |
503 |
Q |
| |
|
| ||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||| ||||| |||||| ||||||||||| |
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|
| T |
27016125 |
caacccaattaatgttgtgaatg--tatgaaaatctgttttcaacttaatcaatagtaattaaatcaatatttttgtacaa-ttttggcatcatactaag |
27016029 |
T |
|
| Q |
504 |
aagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacctcgacgcattttttac |
581 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
27016028 |
aagatggaaggaaattacttcatgagcaattgtcaacatcgttacagtacaagcatgataccttgatgcattttttac |
27015951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 27016293 - 27016223
Alignment:
| Q |
265 |
ttgccttgctgatccacttttctattcatgtttccttgcttggtccctttactaggacatgatggatttttg |
336 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||||| ||| ||||||||| ||||||||||||| |
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|
| T |
27016293 |
ttgccttgctgatccactttcc-attcaattttccttgcttggttcctctactaggacttgatggatttttg |
27016223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 304 - 534
Target Start/End: Original strand, 51201065 - 51201289
Alignment:
| Q |
304 |
ttggtccctttactaggacatgatggatttttgcaagtgaagttcttgaaagggttcaacaaagatgaaaatgtt-gttcttgatcttgactttcaataa |
402 |
Q |
| |
|
||||| ||| ||||||||| | ||||||||||||||||||| |||||||||||||||| ||| ||| ||| ||| |||||||||||||| || || ||| |
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|
| T |
51201065 |
ttggtgcctctactaggacttaatggatttttgcaagtgaaattcttgaaagggttcagcaatgattcaaaggtttgttcttgatcttgatttccattaa |
51201164 |
T |
|
| Q |
403 |
tctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatc-aatagtaatcagatcaatatttttctacaatttttggaatcatacta |
501 |
Q |
| |
|
| | |||||||||| |||| || ||||||| ||||||||| |||||| |||||||||||||| ||||||||| | |||||||||| |||||||| |
|
|
| T |
51201165 |
ccga-----ttaatattgtaaatgaatctgaaaatgtgttttcaaattaatccaatagtaatcagataaatatttttgttcaatttttggcatcatact- |
51201258 |
T |
|
| Q |
502 |
agaagatggaagaaaattacttcatgagcatga |
534 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |
|
|
| T |
51201259 |
--aagatgtaagaaaattacttcatgatcatga |
51201289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 140 - 278
Target Start/End: Original strand, 19179735 - 19179873
Alignment:
| Q |
140 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
237 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||| ||| |||||| |||||||| |
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|
| T |
19179735 |
atttttactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
19179832 |
T |
|
| Q |
238 |
tactcatacttgctgatgcccattggtttgccttgctgatc |
278 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
19179833 |
tactcatacttgctgatgccctttactttgccttgcagatc |
19179873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 1478115 - 1478233
Alignment:
| Q |
140 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
237 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||| ||| |||||| |||||||| |
|
|
| T |
1478115 |
attttaactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
1478212 |
T |
|
| Q |
238 |
tactcatacttgctgatgccc |
258 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1478213 |
tactcatacttgctgatgccc |
1478233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 5327851 - 5327807
Alignment:
| Q |
535 |
gtcaacatcgttacagtacaagcatgatacctcgacgcatttttt |
579 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
5327851 |
gtcaacatcgttatagtacaagcatgataccttgatgcatttttt |
5327807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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