View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_low_12 (Length: 405)

Name: NF15231_low_12
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_low_12
NF15231_low_12
[»] chr7 (17 HSPs)
chr7 (34-389)||(4711853-4712208)
chr7 (34-378)||(4845804-4846148)
chr7 (51-378)||(4666917-4667244)
chr7 (71-378)||(4662990-4663294)
chr7 (28-389)||(4653476-4653834)
chr7 (116-378)||(4630971-4631230)
chr7 (74-389)||(4696971-4697283)
chr7 (77-378)||(4863927-4864225)
chr7 (74-271)||(4636859-4637056)
chr7 (13-386)||(4783619-4783989)
chr7 (35-386)||(4816048-4816396)
chr7 (213-389)||(4643848-4644021)
chr7 (17-167)||(4647471-4647619)
chr7 (74-186)||(4643673-4643785)
chr7 (206-378)||(4672837-4673006)
chr7 (71-189)||(4672675-4672793)
chr7 (303-378)||(4637085-4637160)
[»] chr4 (1 HSPs)
chr4 (34-375)||(18925537-18925875)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 34 - 389
Target Start/End: Complemental strand, 4712208 - 4711853
Alignment:
Q  34 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712208 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 4712109  T
Q  134 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712108 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 4712009  T
Q  234 cagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccag 333  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712008 cagcttctggtgcagtgtaattgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccag 4711909  T
Q  334 gtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711908 gtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtg 4711853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 34 - 378
Target Start/End: Complemental strand, 4846148 - 4845804
Alignment:
Q  34 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 133  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4846148 aatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcacaaaaatgt 4846049  T
Q  134 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 233  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  4846048 aaccttaccatataagtaaaactagaatcaacttcgaaattccaagttacattataatcctctgtcacatactttccataacttcttgcagttaagtata 4845949  T
Q  234 cagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccag 333  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||| | ||||||||||  ||||||||||||| ||||     
T  4845948 cagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaaaacttgatacactaagtggatattctttctccaa 4845849  T
Q  334 gtaaagaggaaaatcactgtcccaattacgaaacatacctgtatc 378  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||    
T  4845848 gtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatc 4845804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 51 - 378
Target Start/End: Original strand, 4666917 - 4667244
Alignment:
Q  51 gttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagt 150  Q
    ||||||||| ||||||||  ||||| |||||||||||||||||||||  |||||||||| ||  |||||||||||||||||| |||||||||||||||||    
T  4666917 gttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagt 4667016  T
Q  151 aaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtatacagcttctggtgcagtg 250  Q
    |||| ||||||||||||| |||||||| || |||||||||| |||| |  ||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  4667017 aaaaatagaatcaactttaaaattccatgtcacattataattctctttggcatccattccataacttcttgcagttaagtacacaacttctggtgcagtg 4667116  T
Q  251 tatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccaggtaaagaggaaaatcac 350  Q
    || || ||||| ||||| | |||||||||||||||||||  |||| ||  | ||||||  ||||||||||||| ||| |||| |||| |||||||||||     
T  4667117 taatttggaatagtattttgtaaatagtttggatgatcaggtccaaaataacttgatatgctttgtggatattgtttctccaagtaacgaggaaaatcat 4667216  T
Q  351 tgtcccaattacgaaacatacctgtatc 378  Q
    |||||||||||||||||||||| |||||    
T  4667217 tgtcccaattacgaaacataccagtatc 4667244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 71 - 378
Target Start/End: Original strand, 4662990 - 4663294
Alignment:
Q  71 ataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttga 170  Q
    ||||| |||||||| | |||||||||||||||  |||||  | ||||||||||||||||||||||||||||||| || ||||||  ||||||||| |  |    
T  4662990 ataaaaatctgaaacattctatcacctttatttatgatattcggatcaaactcacaaaaatgtaaccttaccatgtatgtaaaagaagaatcaacctcaa 4663089  T
Q  171 aattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgtt 270  Q
    ||||||||||||||||||||||||||||||||| | |||||||| |||||||||| |||||||||| ||||||||||||||| || ||||||||||||||    
T  4663090 aattccaagttacattataatcctctgtcacatactttccataatttcttgcagttaagtatacagtttctggtgcagtgtaatttggaatggtattgtt 4663189  T
Q  271 taaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacata 370  Q
    |||||||||| |||||||   |||| || || ||||||||||||||||||||||| | |||| |||| ||||| ||||| | ||||||| ||||||||||    
T  4663190 taaatagtttagatgatc---tccaaaatcacttgatacactttgtggatattctatctccaagtaacgaggagaatcattttcccaataacgaaacata 4663286  T
Q  371 cctgtatc 378  Q
    ||||||||    
T  4663287 cctgtatc 4663294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 4653476 - 4653834
Alignment:
Q  28 ccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaa 127  Q
    ||||| |||||||||||| | | |||||||||| | |||||  ||||||||||| ||||||||||||||||||| ||||||| ||  |||||| ||||||    
T  4653476 ccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaa 4653575  T
Q  128 aaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaa 227  Q
    ||||||||||| ||||||||||||||  | || ||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||| |    
T  4653576 aaatgtaacctgaccatataagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcctctgtgacattcattccataacttctcgcagtta 4653675  T
Q  228 agtatacagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattcttt 327  Q
     ||||||||||||||||||  |||| || ||||| |||||||||  ||||||  ||||||   || || || || ||||||||||| ||||||||| |||    
T  4653676 ggtatacagcttctggtgcgatgtaatttggaattgtattgtttttatagttgagatgat---ttacaaaatcacttgatacacttagtggatattgttt 4653772  T
Q  328 ttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtg 389  Q
     || | |||| ||||| ||||  | |||||||||||||||| ||| |||||| |||||||||    
T  4653773 ctctaagtaacgaggataatcgttatcccaattacgaaacaaaccagtatctaggtttggtg 4653834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 116 - 378
Target Start/End: Original strand, 4630971 - 4631230
Alignment:
Q  116 tcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataac 215  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||  ||||||||||||||||| ||||||| |||  |||||||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaattccaagttacattgtaatcctttgttgcatccattccataac 4631070  T
Q  216 ttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttg 315  Q
    |||| ||||| ||||| |||||||||||||||||||| || | |||||||||||||||||||||| ||||||    |||| ||  | ||||||||||  |    
T  4631071 ttctcgcagttaagtaaacagcttctggtgcagtgtaatttgaaatggtattgtttaaatagtttagatgat---gtccaaaataacttgatacactaag 4631167  T
Q  316 tggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatc 378  Q
    |||||||||||| |||| |||| ||||||||||| |||||||||| |||||||||||||||||    
T  4631168 tggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatc 4631230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 74 - 389
Target Start/End: Complemental strand, 4697283 - 4696971
Alignment:
Q  74 aatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaat 173  Q
    ||||| ||||| |||||||||||| |||| |||||| || ||||||||||||||||||| |||||||||||||||||||||| |  |||||||| |||||    
T  4697283 aatatttgaaagactctatcacctatatttttgatatgctgatcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaat 4697184  T
Q  174 tccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgtttaa 273  Q
    |||||||||||||  ||||||||||| |||||| ||||  |||||||||||| ||||| |||||||||||||||||||| ||  ||||||| ||||||      
T  4697183 tccaagttacattgaaatcctctgtctcatccaatccacgacttcttgcagttaagtacacagcttctggtgcagtgtaattttgaatggtgttgttttc 4697084  T
Q  274 atagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacct 373  Q
    ||||||  ||||||    |  | || || ||||||  ||||||||||||| ||| |||| |||| ||||||||||| ||||||| ||||||||||||||     
T  4697083 atagttaagatgat---gtttaaaatcacttgatatgctttgtggatattgtttctccaagtaacgaggaaaatcattgtcccagttacgaaacatacca 4696987  T
Q  374 gtatcttggtttggtg 389  Q
    ||||||||||||||||    
T  4696986 gtatcttggtttggtg 4696971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 77 - 378
Target Start/End: Original strand, 4863927 - 4864225
Alignment:
Q  77 atctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattcc 176  Q
    ||||||||  ||||||||||||||||  | |||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  4863927 atctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaattcc 4864026  T
Q  177 aagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgtttaaata 276  Q
    |||||||||| || ||||||||  ||| |  ||| |||||||||||||| ||||| ||| |||||||||||||||| ||  ||||||| ||||||  |||    
T  4864027 aagttacattgtactcctctgtggcatactgtccgtaacttcttgcagttaagtacacaacttctggtgcagtgtaattttgaatggtgttgttttcata 4864126  T
Q  277 gtttggatgatcacttccataaacagttgatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgta 376  Q
    |||  ||||||    |  | || || ||||||  ||||||||||||| ||| |||| |||| ||||||||||| |||||||||||||||||||||| |||    
T  4864127 gttaagatgat---gtttaaaatcacttgatatgctttgtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacataccagta 4864223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 4636859 - 4637056
Alignment:
Q  74 aatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaat 173  Q
    ||||||||||| ||||||||||||||||  |||||| ||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||  || |    
T  4636859 aatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagt 4636958  T
Q  174 tccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgttt 271  Q
    ||||||||||||||||||||| |||| ||| |||||| |||||||||||||| ||||| ||| ||||||||||| |||| || ||||||  |||||||    
T  4636959 tccaagttacattataatcctttgtctcatacattccgtaacttcttgcagttaagtacacaacttctggtgcaatgtaatttggaatgacattgttt 4637056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 4783989 - 4783619
Alignment:
Q  13 caaaggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagc 112  Q
    |||||||||||||  |||  | |||||||||||    |||||||||||| ||||||  || || |||||||||| ||||||||| |  |  |||||| ||    
T  4783989 caaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgc 4783890  T
Q  113 agatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccat 212  Q
      ||||||||||||||||||||||||||||||||||||||||  |||||||||||  || |||||||||||||| |||||||||||| ||| ||||||||    
T  4783889 caatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcatacattccat 4783790  T
Q  213 aacttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacact 312  Q
    ||||||||||||| ||||| ||| ||||||||||| |||| || ||||||  |||||||  |||  || | | ||    |  | |  || ||||||||||    
T  4783789 aacttcttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgtttttatatgttaggttat---gtgtaaagtcacttgatacact 4783693  T
Q  313 ttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttg 386  Q
       ||| || ||||| |||| |||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  4783692 agatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttg 4783619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 386
Target Start/End: Complemental strand, 4816396 - 4816048
Alignment:
Q  35 atcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgta 134  Q
    |||||||||||  |  ||||||||||| ||||||  || || |||||||||| ||||||||| |  |  |||||| ||  ||||||||||||||||||||    
T  4816396 atcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4816297  T
Q  135 accttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtatac 234  Q
    ||||||||||||||||||||  |||||||||||  || |||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||| ||    
T  4816296 accttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcatacattccataacttcttgcagttaagtaaac 4816197  T
Q  235 agcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccagg 334  Q
    | ||||||||||| |||| || ||||||  |||||||  |||  || | | ||    |  | |  || ||||||||||   ||| || ||||| |||| |    
T  4816196 accttctggtgcaatgtaatttggaatgacattgtttttatatgttaggttat---gtgtaaagtcacttgatacactagatgggtactctttctccaag 4816100  T
Q  335 taaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttg 386  Q
    ||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  4816099 taacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttg 4816048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 213 - 389
Target Start/End: Original strand, 4643848 - 4644021
Alignment:
Q  213 aacttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacact 312  Q
    ||||||||||||| || || |||||||||||||||||||| || ||||||| ||| |||||||||||| ||||||    | ||||| || ||||||| ||    
T  4643848 aacttcttgcagttaaataaacagcttctggtgcagtgtaatttggaatggcattttttaaatagtttagatgatg---ttcataatcatttgatacgct 4643944  T
Q  313 ttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtg 389  Q
    | | ||||||| ||| |||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  4643945 tagcggatattgtttctccaagtaacgaggataatcattgtcccaattacgaaacatacctgtatcttggtttggtg 4644021  T

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Target: chr7; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 4647471 - 4647619
Alignment:
Q  17 ggagcaccagcccatgtaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagat 116  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||  ||||| || ||||||||| ||||||||  |||||| ||| |   ||    
T  4647471 ggagcaccagcccatgcaatcacatcagcataatgttcagccaaaatatcatctataaacatatgaaaaactgtatcacctgaattctttatatgtcaat 4647570  T
Q  117 caaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactt 167  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  4647571 caaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaactt 4647619  T

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Target: chr7; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 4643673 - 4643785
Alignment:
Q  74 aatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaat 173  Q
    ||||||||||| |||||||||||||||||  | |||  | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||    
T  4643673 aatatctgaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaat 4643772  T
Q  174 tccaagttacatt 186  Q
    |||||||||||||    
T  4643773 tccaagttacatt 4643785  T

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Target: chr7; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 206 - 378
Target Start/End: Original strand, 4672837 - 4673006
Alignment:
Q  206 attccataacttcttgcagtaaagtatacagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttg 305  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||| || |||||||||||||||||| ||||  ||||||   |   |||  || |||    
T  4672837 attccataacttcttgcagttacgtaaacagcttctggtgcagtgtaatttggaatggtattgtttaaaaagttgagatgatgcat---atactcacttg 4672933  T
Q  306 atacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatc 378  Q
    |||||||  ||||||||| ||| |||| ||||  | |||||||| |||||||||||||||||||||| |||||    
T  4672934 atacactaagtggatattgtttctccaagtaaccatgaaaatcattgtcccaattacgaaacataccagtatc 4673006  T

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Target: chr7; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 4672675 - 4672793
Alignment:
Q  71 ataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttga 170  Q
    ||||| ||||||||  ||||||||||| ||||  ||||||||   ||||||||||||||||||||||||||||||||||| |||  ||||||||| |  |    
T  4672675 ataaaaatctgaaaggctctatcacctgtattaatgataagcctgtcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaa 4672774  T
Q  171 aattccaagttacattata 189  Q
    |||||||||||||||||||    
T  4672775 aattccaagttacattata 4672793  T

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Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 4637085 - 4637160
Alignment:
Q  303 ttgatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatc 378  Q
    ||||||||||   ||| || ||||| |||| |||||||||||||||| || ||||||| |||||||||||||||||    
T  4637085 ttgatacactagatgggtactctttctccaagtaaagaggaaaatcattgccccaattgcgaaacatacctgtatc 4637160  T

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Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 34 - 375
Target Start/End: Complemental strand, 18925875 - 18925537
Alignment:
Q  34 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 133  Q
    |||||||||||| | | ||||||||||| ||||||  ||||| |||||||||||||||||||||| |||||| ||| ||  ||||||||| ||||||||     
T  18925875 aatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatgc 18925776  T
Q  134 aaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataacttcttgcagtaaagtata 233  Q
    || ||||||| |||||||||   |||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  18925775 aatcttaccaaataagtaaaggcagaatcaacttcaaaattccaagttacattataatcctttgtcgcatccattccataacttcttgcagttaagtata 18925676  T
Q  234 cagcttctggtgcagtgtatttgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtggatattctttttccag 333  Q
    || |||||||||| ||||| || |||||||||||||||| ||||||  ||| ||    |  | || || ||||||||||| ||||||||| ||| ||||     
T  18925675 caacttctggtgccgtgtagtttggaatggtattgtttatatagttgagattat---gtgtaaaatcatttgatacacttagtggatattgtttctccaa 18925579  T
Q  334 gtaaagaggaaaatcactgtcccaattacgaaacatacctgt 375  Q
    |||| ||||||||||  ||||||||| |||||||||||||||    
T  18925578 gtaacgaggaaaatcgttgtcccaataacgaaacatacctgt 18925537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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