View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_13 (Length: 405)
Name: NF15231_low_13
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 32573839 - 32574228
Alignment:
| Q |
1 |
tcaatgtgttgtgcttgcccttttaacattcttaataaggaacataacaaagtgactaaccataagaattcattatttttaaactaannnnnnncatcat |
100 |
Q |
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| T |
32573839 |
tcaatgtgttgtgcttgcccttttaacattcttaataaggaacataacaaagtgactaaccataagaattcattatttttaaactaatttttttcatcat |
32573938 |
T |
|
| Q |
101 |
tattttaatatttcacgttagtaaagaaaaaagttatattgtcggaccatggtaaagttaatatttaggaaaaatgcaatatttgtttggaaaccaattg |
200 |
Q |
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| T |
32573939 |
tattttaatatttcacgttagtaaagaaaaaagttatattgtcggaccatggtaaagt-aatatttaggaaaaatgcaatatttgtttggaaaccaaatg |
32574037 |
T |
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| Q |
201 |
gttggataaaaaagaatgcctattgtaattccatgatatatcaatttattcatatagatttcccaaaataatttggtattgaatgtaaacaaaacatatt |
300 |
Q |
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| T |
32574038 |
gttggataaaaaagaatgcctattgtaattccatgatatatcaatttattcatatagatttcccaaaataattgggtattgaatgtaaaccaaacatatt |
32574137 |
T |
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| Q |
301 |
ttttgaaattattaatacacacacaggta--nnnnnnnnnnnnnnntatggaatcatggtataagtagagttaattttcaagtgaatttac |
389 |
Q |
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| T |
32574138 |
ttttgaaattattaatacacacacaggtatgtgtgtgtgtgtgtgttatggaatcatggtataagtagagttaattttcaagtgaatttac |
32574228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 32610822 - 32611006
Alignment:
| Q |
3 |
aatgtgttgtgcttgcccttttaacattcttaataaggaacataacaaagtgactaaccataagaattcattatttttaaactaannnnnnncatcatta |
102 |
Q |
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| T |
32610822 |
aatgtgttgtgtttgtccctttgacatatctaataaggaacataacaaactgaataaccataagaattcattctttttgaactaa--ttttccattactt |
32610919 |
T |
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| Q |
103 |
ttttaatatttcacgttagtaaagaaaaaagttatattgtcggaccatggtaaagttaatatttaggaaaaatgcaatatttgtttgg |
190 |
Q |
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| T |
32610920 |
ttataacatttcatgtcagtaaggaaaaaatttatattgttggaccatggtaaag-taatatgtaggaataatgcaccatttgtttgg |
32611006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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