View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_low_15 (Length: 388)

Name: NF15231_low_15
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_low_15
NF15231_low_15
[»] chr2 (1 HSPs)
chr2 (97-388)||(16645490-16645781)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 97 - 388
Target Start/End: Complemental strand, 16645781 - 16645490
Alignment:
Q  97 aaatgtccaacttgttatgatcaattaagtattttctagttttggaagatattgtcacatagacatattaagaccctcaagaatcagtatgagtcactct 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16645781 aaatgtccaacttgttatgatcaattaagtattttctagttttggaagatattgtcacatagacatattaagaccctcaagaatcagtatgagtcactct 16645682  T
Q  197 cttatccactttttgatatcaattggttgcctgcatgaatgatttttcacctccgacaagaaatacaggaagagacacgtagtgcttatagtattcaagg 296  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16645681 cttatccactttttgatatcaattggttgcttgcatgaatgatttttcacctccgacaagaaatacaggaagagacacgtagtgcttatagtattcaagg 16645582  T
Q  297 acttgacatgtgtagccatatcttgttgtttcacaacctaacatatagataatcgcagaactcacgaccctgtgccctaggtgtgtgagcac 388  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  16645581 acttgacatgtgtagccatatcttgttgtttcacaacccaacatataaataatcgcagaactcacgaccctgtgccctaggtgtgtaagcac 16645490  T

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