View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_low_19 (Length: 347)

Name: NF15231_low_19
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_low_19
NF15231_low_19
[»] chr5 (9 HSPs)
chr5 (1-347)||(41547281-41547627)
chr5 (13-247)||(41519131-41519365)
chr5 (13-253)||(41508905-41509145)
chr5 (151-258)||(33079393-33079500)
chr5 (24-97)||(41503562-41503635)
chr5 (13-97)||(41499369-41499453)
chr5 (24-68)||(41469535-41469579)
chr5 (13-105)||(41503905-41503997)
chr5 (304-336)||(41518950-41518982)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 41547627 - 41547281
Alignment:
Q  1 ttgtattgtgtgggctggaattgagattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaactataagagaattgaggaacgaaaatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547627 ttgtattgtgtgggctggaattgagattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaactataagagaattgaggaacgaaaatagc 41547528  T
Q  101 aaattagcaaatgataagcacaatgttgacatattactagcgtcttggatcacgaagtttagagtcttgcatgaaaaagtttcaaggctggaggatgatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547527 aaattagcaaatgataagcacaatgttgacatattactagcgtcttggatcacgaagtttagagtcttgcatgaaaaagtttcaaggctggaggatgatt 41547428  T
Q  201 ccaaactattgatgagcttaaatgtctctggtggtggaaacaatgagggggatcctccagttgattttatggctgctgattctgaagagaaagacaaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547427 ccaaactattgatgagcttaaatgtctctggtggtggaaacaatgagagggatcctccagttgattttatggctgctgattctgaagagaaagacaaaga 41547328  T
Q  301 gaaagagtctgaagttaaagatgcatcatcaggtatggaattgagtt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41547327 gaaagagtctgaagttaaagatgcatcatcaggtatggaattgagtt 41547281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 41519365 - 41519131
Alignment:
Q  13 ggctggaattgagattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaactataagagaattgaggaacgaaaatagcaaattagcaaat 112  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||| |||||| ||  ||||||||||||| ||  ||||||   ||    
T  41519365 ggctggaattgagattaaaaatggcgaattgaaggaaacagttaacacgaatttggcaattataagcgagctgaggaacgaaaacagagaattagtggat 41519266  T
Q  113 gataagcacaatgttgacatattactagcgtcttggatcacgaagtttagagtcttgcatgaaaaagtttcaaggctggaggatgattccaaactattga 212  Q
    || ||   ||| | ||| || ||||| | ||||| || ||  ||||||| ||  || ||||||| |||| ||||| |||||||||||||||| || |  |    
T  41519265 gagaaatgcaagggtgagatcttactcgagtctttgaacaaaaagtttaaagcatttcatgaaagagttgcaaggttggaggatgattccaacctttcaa 41519166  T
Q  213 tgagcttaaatgtctctggtggtggaaacaatgag 247  Q
    ||||  || ||| ||||||||||||||||||||||    
T  41519165 tgagtgtagatgcctctggtggtggaaacaatgag 41519131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 41509145 - 41508905
Alignment:
Q  13 ggctggaattgagattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaactataagagaattgaggaacgaaaatagcaaattagcaaat 112  Q
    |||||||||||| || |||||| |||||||||| |||||||| || | ||||||||||| |||||| ||  ||||||||||||| || ||||||||  ||    
T  41509145 ggctggaattgaaataaaaaatagtgaattgaaggaaacagtgaatacgaatttggcaattataagcgagctgaggaacgaaaacagaaaattagcggat 41509046  T
Q  113 gataagcacaatgttgacatattactagcgtcttggatcacgaagtttagagtcttgcatgaaaaagtttcaaggctggaggatgattccaaactattga 212  Q
    || ||    || | ||| || ||||| | ||||| || ||| ||||| |||   |||||||||| |||| ||||| ||||||||| |||||| || |  |    
T  41509045 gagaaatgtaagggtgagatcttactcgagtctttgaacacaaagttcagaacattgcatgaaagagttgcaaggttggaggatggttccaacctttcaa 41508946  T
Q  213 tgagcttaaatgtctctggtggtggaaacaatgagggggat 253  Q
    ||||  || ||| |||||||||||||||| |||||||||||    
T  41508945 tgagtgtagatgcctctggtggtggaaacgatgagggggat 41508905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 33079500 - 33079393
Alignment:
Q  151 cacgaagtttagagtcttgcatgaaaaagtttcaaggctggaggatgattccaaactattgatgagcttaaatgtctctggtggtggaaacaatgagggg 250  Q
    ||||||||| | ||| ||||||||||  ||| || || ||||||||||||||||||| ||| ||| ||||  || ||||||| | ||||||||||| |||    
T  33079500 cacgaagttcaaagtattgcatgaaagtgttgcacggttggaggatgattccaaacttttggtgaacttagctgcctctggtcgaggaaacaatgacggg 33079401  T
Q  251 gatcctcc 258  Q
    || |||||    
T  33079400 gagcctcc 33079393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 41503635 - 41503562
Alignment:
Q  24 agattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaactataagagaattgaggaacgaaaat 97  Q
    ||||||||| |||||||||||| |||||| | || |||||||||| ||||||||| ||  ||||||| ||||||    
T  41503635 agattaaaactggtgaattgaaggaaacaatgaagaagaatttggaaactataagtgagctgaggaaagaaaat 41503562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 41499453 - 41499369
Alignment:
Q  13 ggctggaattgagattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaactataagagaattgaggaacgaaaat 97  Q
    ||||||| || ||||| ||| |||||||||||| |||||| | || |||||||||| ||||||||| ||  ||||||| ||||||    
T  41499453 ggctggacttaagattgaaactggtgaattgaaggaaacaatgaagaagaatttggaaactataagtgagctgaggaaagaaaat 41499369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 41469579 - 41469535
Alignment:
Q  24 agattaaaaatggtgaattgaatgaaacagtaaacaagaatttgg 68  Q
    |||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  41469579 agattaaaaatgatgaattgaaggaaacagcaaagaagaatttgg 41469535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 41503997 - 41503905
Alignment:
Q  13 ggctggaattgagattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaactataagagaattgaggaacgaaaatagcaaatt 105  Q
    ||||| |||| ||| ||||||| | |||||||| | ||| || |  ||| |||||||||||||||| || |||||||| ||||| ||||||||    
T  41503997 ggctgaaattaagagtaaaaatagcgaattgaaggcaactgtgacgaagtatttggcaactataagcgagttgaggaaagaaaacagcaaatt 41503905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 41518982 - 41518950
Alignment:
Q  304 agagtctgaagttaaagatgcatcatcaggtat 336  Q
    ||||||||||||||||| |||||||||||||||    
T  41518982 agagtctgaagttaaaggtgcatcatcaggtat 41518950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University