View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_low_2 (Length: 596)

Name: NF15231_low_2
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_low_2
NF15231_low_2
[»] chr4 (5 HSPs)
chr4 (13-275)||(30971055-30971318)
chr4 (259-507)||(30970598-30970845)
chr4 (536-596)||(30970304-30970364)
chr4 (496-552)||(30970536-30970593)
chr4 (70-150)||(10988660-10988741)
[»] scaffold0177 (1 HSPs)
scaffold0177 (70-184)||(5365-5481)
[»] chr1 (1 HSPs)
chr1 (74-190)||(21421799-21421917)
[»] chr5 (2 HSPs)
chr5 (70-184)||(10244628-10244744)
chr5 (92-155)||(33833570-33833633)
[»] scaffold0001 (1 HSPs)
scaffold0001 (86-169)||(134183-134265)
[»] chr8 (2 HSPs)
chr8 (70-151)||(18063862-18063944)
chr8 (92-148)||(15701804-15701860)
[»] chr7 (5 HSPs)
chr7 (70-151)||(27662655-27662737)
chr7 (70-131)||(14968983-14969045)
chr7 (70-131)||(15398459-15398521)
chr7 (97-149)||(4238600-4238652)
chr7 (100-172)||(9252964-9253036)
[»] chr6 (1 HSPs)
chr6 (92-181)||(17826009-17826099)
[»] scaffold0012 (1 HSPs)
scaffold0012 (92-165)||(146312-146385)
[»] chr3 (1 HSPs)
chr3 (70-151)||(17920019-17920101)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 30971318 - 30971055
Alignment:
Q  13 gatatatgggtggggtggattaaggattggaagcaactttatttgccacccctggccctacaagaaaacagtgtttaaagtcggccaaaaacccactcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30971318 gatatatgggtggggtggattaaggattggaagcaactttatttgccacccctggccctacaagaaaacagtgtttaaagtcggccaaaaacccacttta 30971219  T
Q  113 accgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgtcggggg-aggctaaaaaattagaattcatttttcaacatatatgatt 211  Q
    ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  30971218 accaggcaaaaactgacgctaacaatgaattcacgtcggattagtgtcggtgtcgggggcaggcaaaaaaattagaatccatttttcaacatatatgatt 30971119  T
Q  212 tattaattctaaagtaaaatttagaagttatgatcacataagtattagttatagagttagtttt 275  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30971118 tattaattctaaagtaaaatttagaagttaagatcacataagtattagttatagagttaatttt 30971055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 259 - 507
Target Start/End: Complemental strand, 30970845 - 30970598
Alignment:
Q  259 gttatagagttagttttataccttgaaagaatgaatctccaagtttattttttatgaacatattccataagatgtttactatcaatttaaattgacnnnn 358  Q
    |||||||||||| |||||||| |||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||        
T  30970845 gttatagagttaattttatactttgaaagaatgaatcttcgagtttactttttatgaacttattccataagatgtttactatcaatttaaattgac-aaa 30970747  T
Q  359 nnntacttattaaatannnnnnnnaaattcagaaaatgagatctcagtcgannnnnnngagaaaacaatctcacaacnnnnnnnngttgagnnnnnnnnn 458  Q
       |||||||||||||        |||||||||||||||||||||||||||       |||||||||||||||||||        ||||||             
T  30970746 aaatacttattaaatatttttttaaaattcagaaaatgagatctcagtcgatttttttgagaaaacaatctcacaactttttcttgttgagaaaaaaaat 30970647  T
Q  459 ntatctatcaatttaaattgagaaaacaaatatcacaaatttaaaaatc 507  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30970646 atatctatcaatttaaattgagaaaacaaatatcacaaatttaaaaatc 30970598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 30970364 - 30970304
Alignment:
Q  536 aaaacctccactgctatttatgttgagctttgaggtctcttgaatatggtcttaaaacctt 596  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30970364 aaaacctccaccgctatttatgttgagctttgaggtctctttaatatggtcttaaaacctt 30970304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 30970593 - 30970536
Alignment:
Q  496 aatttaaaaatcccataataagaattttgtgttgtaat-ttaaaacctccactgctat 552  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  30970593 aatttaaaaatcccataataagaatcttgtgttgtaatattaaaacctccactcctat 30970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 10988660 - 10988741
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcg 150  Q
    |||||||||||||  |||| | ||||||||| |||||||||||||  ||| |||| | |||||||||| |||||| ||||||    
T  10988660 ctacaagaaaacaacgttttagagtcggccagaaacccactctaatagggcaaaagccgacgctaacactgaattagcgtcg 10988741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 5481 - 5365
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgtcgg 168  Q
    ||||||||||||||||||| | ||||||||| |||||||||||||| |||||||| | |||||||||| |||||| |||||||||||| ||| |||||||    
T  5481 ctacaagaaaacagtgttttagagtcggccagaaacccactctaacagggaaaaagccgacgctaacactgaattagcgtcggattagcgtcagtgtcgg 5382  T
Q  169 ggg-aggctaaaaaatt 184  Q
    ||| |||||||||||||    
T  5381 gggcaggctaaaaaatt 5365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 21421917 - 21421799
Alignment:
Q  74 aagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgtcggg-gg 171  Q
    |||||||||| |||| | |||||||||||||||||||||||| ||| ||||||||||||||| |||||| | |||||||||||| |||||||||||| |     
T  21421917 aagaaaacagcgttttagagtcggccaaaaacccactctaactgggcaaaaactgacgctaagaatgaaatagcgtcggattagcgtcggtgtcgggtgc 21421818  T
Q  172 aggctaaaaaattagaatt 190  Q
    | |||||||||||||||||    
T  21421817 aagctaaaaaattagaatt 21421799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 10244628 - 10244744
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgtcgg 168  Q
    |||||||||||||| |||| | ||||||||| |||||||||||||  ||| |||| | |||||||||| |||||| |||||| ||||| |||||||||||    
T  10244628 ctacaagaaaacagcgttttagagtcggccagaaacccactctaatagggcaaaagccgacgctaacactgaattagcgtcgaattagcgtcggtgtcgg 10244727  T
Q  169 ggg-aggctaaaaaatt 184  Q
    ||| |||||||||||||    
T  10244728 gggcaggctaaaaaatt 10244744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 33833633 - 33833570
Alignment:
Q  92 gtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggatta 155  Q
    ||||||||||||||||||||| | ||| |||||| || ||||||||||| || || ||||||||    
T  33833633 gtcggccaaaaacccactctatcagggtaaaaacggatgctaacaatgatttagcatcggatta 33833570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 134265 - 134183
Alignment:
Q  86 tttaaagtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgtcggg 169  Q
    |||| |||||||||||| ||||||||||| ||  ||||||||||||||||| ||  || |||||||||||| ||||||||||||    
T  134265 tttagagtcggccaaaa-cccactctaacaggacaaaaactgacgctaacactgctttagcgtcggattagcgtcggtgtcggg 134183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 18063944 - 18063862
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcgg 151  Q
    |||||||||||||| |||| | ||||||||| |||||||||||||| ||| |||| | |||||||||| |||||| |||||||    
T  18063944 ctacaagaaaacagcgttttagagtcggccagaaacccactctaacagggcaaaagccgacgctaacactgaattagcgtcgg 18063862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 15701860 - 15701804
Alignment:
Q  92 gtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgt 148  Q
    ||||||| ||||||||||||||| | | ||||||||||||||| | |||||| ||||    
T  15701860 gtcggcctaaaacccactctaactgtgtaaaaactgacgctaagactgaattagcgt 15701804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 27662655 - 27662737
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcgg 151  Q
    |||||||||||||  |||| | ||||||| |||||||||||||||| ||| |||||| ||||||||||||||| | |||||||    
T  27662655 ctacaagaaaacaacgttttagagtcggcgaaaaacccactctaactgggcaaaaaccgacgctaacaatgaaatagcgtcgg 27662737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 14968983 - 14969045
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgc 131  Q
    |||||||||||||  |||| | |||||||||||||||||||||||| ||| |||||| |||||    
T  14968983 ctacaagaaaacaacgttttagagtcggccaaaaacccactctaacagggcaaaaaccgacgc 14969045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 15398459 - 15398521
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgc 131  Q
    |||||||||||||  |||| | |||||||||||||||||||||||| ||| |||||| |||||    
T  15398459 ctacaagaaaacaacgttttagagtcggccaaaaacccactctaacagggcaaaaaccgacgc 15398521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 4238600 - 4238652
Alignment:
Q  97 ccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtc 149  Q
    |||||||||||||||||  ||| |||||| |||||||||| |||||| |||||    
T  4238600 ccaaaaacccactctaatagggcaaaaaccgacgctaacactgaattagcgtc 4238652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 9253036 - 9252964
Alignment:
Q  100 aaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgtcggggga 172  Q
    ||||||||| ||||| ||| |||||| ||| |||| |  || || |||||||||||| |||||||||||||||    
T  9253036 aaaacccacgctaacagggtaaaaaccgactctaatacagatttagcgtcggattagcgtcggtgtcggggga 9252964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 17826099 - 17826009
Alignment:
Q  92 gtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgtc-gggggaggctaaaaa 181  Q
    |||||||| |||||||||||||| | | |||||| |||||||||| ||| || |||||||||||| ||||| ||| |||| ||||||||||    
T  17826099 gtcggccagaaacccactctaacagagcaaaaaccgacgctaacattgatttagcgtcggattagcgtcggggtcaggggaaggctaaaaa 17826009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 146385 - 146312
Alignment:
Q  92 gtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcggattagtgtcggtgt 165  Q
    ||||||||||||||||||||||  |||||||||| |||||||| | ||| || | |||||||||| ||||||||    
T  146385 gtcggccaaaaacccactctaaaagggaaaaaaccgacgctaatactgatttagagtcggattagcgtcggtgt 146312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 17920019 - 17920101
Alignment:
Q  70 ctacaagaaaacagtgtttaa-agtcggccaaaaacccactctaaccgggaaaaaactgacgctaacaatgaattcgcgtcgg 151  Q
    |||||||||||||  |||| | ||||||||| |||||||||||||  ||| |||| | |||||||||| |||||| |||||||    
T  17920019 ctacaagaaaacaacgttttagagtcggccagaaacccactctaatagggcaaaagccgacgctaacactgaattagcgtcgg 17920101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University