View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_21 (Length: 345)
Name: NF15231_low_21
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 22201511 - 22201704
Alignment:
| Q |
1 |
ttaaactaatggtccactacattt-aaatctcaatccagcaaagtactcatagcactggacaaagctagattctagatggttgagttgagagagacacat |
99 |
Q |
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| T |
22201511 |
ttaaactaatggtccactacattttaaatctcaatccagcaaagtacttatagcactggacaaagctagattctagatggttgagttgagagagacatat |
22201610 |
T |
|
| Q |
100 |
catatttttcatattgaagcctacataactagggaacagcaggaagaaagctcaccactttaacataaatgtatagtagctaactgttcccttg |
193 |
Q |
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| T |
22201611 |
catatttttcatattgaagcctacataactagggaacagcaggaagaaagctcaccactttaacataaatgtatagtagctaactgttcccttg |
22201704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 22202467 - 22202544
Alignment:
| Q |
253 |
gttataagaaaaaatttaacataaggggattatgcttggtccaagaggaaattatatttacctcactgtaggagatta |
330 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
22202467 |
gttataagaaaaaatttaagataaggggattatgcttggtccaagaggaaattatatttaccacactctaggagatta |
22202544 |
T |
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