View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_25 (Length: 316)
Name: NF15231_low_25
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 22263168 - 22262875
Alignment:
| Q |
10 |
gatgaaaacgacgatgttgattactaagttacattgtgattaaaaatttgtatttatcttgactaactatatgctcatatagtatgtattctttctttat |
109 |
Q |
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| T |
22263168 |
gatgaaaacgacgatgttgattactaagttacattgtgattaaaaatttgtatttatcttgaccaactatatgttgatatagtatgtattctttctttat |
22263069 |
T |
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| Q |
110 |
gaaaaaa-tttgatttacccgaatttttgtcggtaaatcaatttagggtaggatttgatgaatatgatgtgtgttacacttaacaatgatgaaaatgata |
208 |
Q |
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| T |
22263068 |
gaaaaaaatttgatttacccgaatttttgtcggtaaatcaatttagggtaggatttgatgaatatgatgcgtgttacacttaacgatgataaaaatgata |
22262969 |
T |
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| Q |
209 |
ttgttaatttctttagttattttgtgactaaacggtatcttccattcttgcttgtatatttattttattgtatgatatttgtttcaaatatatg |
302 |
Q |
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| T |
22262968 |
ttgttaatgttttcagttattttgtgactaaacggtatcttccgttcttgcttgtatatttattttatggtatgatatttgtttcaaatatatg |
22262875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 22265331 - 22265624
Alignment:
| Q |
10 |
gatgaaaacgacgatgttgattactaagttacattgtgattaaaaatttgtatttatcttgactaactatatgctcatatagtatgtattctttctttat |
109 |
Q |
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| T |
22265331 |
gatgaaaacgacgatgttgattactaagttacattgtgattaaaaatttgtatttatcttgaccaactatatgttgatatagtatgtattctttctttat |
22265430 |
T |
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| Q |
110 |
gaaaa-aatttgatttacccgaatttttgtcggtaaatcaatttagggtaggatttgatgaatatgatgtgtgttacacttaacaatgatgaaaatgata |
208 |
Q |
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| T |
22265431 |
gaaaaaaatttgatttacccgaatttttgtcggtaaatcaatttagggtaggatttgatgaatatgatgcgtgttacacttaacgatgataaaaatgata |
22265530 |
T |
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| Q |
209 |
ttgttaatttctttagttattttgtgactaaacggtatcttccattcttgcttgtatatttattttattgtatgatatttgtttcaaatatatg |
302 |
Q |
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| T |
22265531 |
ttgttaatgttttcagttattttgtgactaaacggtatcttccgttcttgcttgtatatttattttatggtatgatatttgtttcaaatatatg |
22265624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 22270672 - 22270803
Alignment:
| Q |
10 |
gatgaaaacgacgatgttgattactaagttacattgtgattaaaaatttgtatttatcttgactaactatatgctcatatag----tatgtattctttct |
105 |
Q |
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||||||||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
22270672 |
gatgaaaacgaggatgttgattgctaagttactttgtgattagaaatttgtatttatcttgactaactatatcttgatatagtatatatgtattctttct |
22270771 |
T |
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| Q |
106 |
ttatg-aaaaaatttgatttacccgaattttt |
136 |
Q |
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| T |
22270772 |
ttatgaaaaaaatttgatttacaccaattttt |
22270803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 302
Target Start/End: Complemental strand, 45873522 - 45873315
Alignment:
| Q |
86 |
atatagtatgtattctttctttatgaaaaaatttgatttacccgaatttttgtcggtaaatcaatttagggtaggatttgatgaatatgatgtgtgttac |
185 |
Q |
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| T |
45873522 |
atatagtatttattctttccttatgataaaatt-gatttacctaaatttttgttggtaaatcaatttagggttgga-ttgatgaatatga--tgtgttat |
45873427 |
T |
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| Q |
186 |
acttaacaatgatgaaaatgata-ttgttaat-ttctttagttattttgtgactaaacggtatcttccattcttgcttgtatatttattttattgtatga |
283 |
Q |
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| T |
45873426 |
att-----ataatgaaaatgatatttgttaatattacttagttattttgtgactaaaaattatct--agtgtttccttgtatatttattttattgtataa |
45873334 |
T |
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| Q |
284 |
tatttgtttcaaatatatg |
302 |
Q |
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| T |
45873333 |
tatttgtttcaaatatatg |
45873315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 10082049 - 10082012
Alignment:
| Q |
140 |
ggtaaatcaatttagggtaggatttgatgaatatgatg |
177 |
Q |
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| T |
10082049 |
ggtaaatcaatttagggtaggatttgattactatgatg |
10082012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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