View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_26 (Length: 309)
Name: NF15231_low_26
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27344071 - 27344012
Alignment:
| Q |
1 |
ctctagttcaaatcaagcatagcatagcttaagcttattttaaaggaatcattccatatt |
60 |
Q |
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| T |
27344071 |
ctctatttcaaatcaagcataacatagcttaagcttattttaaaggaatcattccatatt |
27344012 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 38055839 - 38055890
Alignment:
| Q |
154 |
tgaaccataaattttgtgtatttaaggggagctaactaatagaaaattctca |
205 |
Q |
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||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
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| T |
38055839 |
tgaaccatatattttatgtatttaaggggagctaactaatcaaaaattctca |
38055890 |
T |
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