View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15231_low_27 (Length: 302)

Name: NF15231_low_27
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15231_low_27
NF15231_low_27
[»] chr7 (19 HSPs)
chr7 (13-281)||(30516147-30516415)
chr7 (21-55)||(38134422-38134456)
chr7 (21-55)||(44172906-44172940)
chr7 (23-59)||(10893359-10893395)
chr7 (15-55)||(21247752-21247792)
chr7 (11-55)||(36314643-36314687)
chr7 (20-54)||(19930958-19930992)
chr7 (26-55)||(2143869-2143898)
chr7 (26-55)||(2144555-2144584)
chr7 (26-55)||(5937437-5937466)
chr7 (22-55)||(7133294-7133327)
chr7 (13-54)||(12278836-12278877)
chr7 (10-51)||(23165286-23165327)
chr7 (13-46)||(41229323-41229356)
chr7 (23-55)||(3119407-3119439)
chr7 (10-54)||(18233615-18233659)
chr7 (23-55)||(23930230-23930262)
chr7 (23-55)||(37775993-37776025)
chr7 (13-53)||(41360911-41360951)
[»] chr4 (26 HSPs)
chr4 (13-55)||(5654607-5654649)
chr4 (21-55)||(10546157-10546191)
chr4 (21-55)||(18513257-18513291)
chr4 (18-55)||(11110209-11110246)
chr4 (13-50)||(43188613-43188650)
chr4 (13-54)||(44796979-44797020)
chr4 (22-54)||(26276026-26276058)
chr4 (24-55)||(34589722-34589753)
chr4 (21-55)||(2976703-2976737)
chr4 (21-55)||(8457934-8457968)
chr4 (13-47)||(9996841-9996875)
chr4 (21-55)||(14465310-14465344)
chr4 (21-55)||(20743294-20743328)
chr4 (21-55)||(31243564-31243598)
chr4 (21-55)||(43299987-43300021)
chr4 (21-55)||(43300625-43300659)
chr4 (13-55)||(46180952-46180994)
chr4 (13-55)||(51673458-51673500)
chr4 (26-55)||(13307891-13307920)
chr4 (21-54)||(19230326-19230359)
chr4 (21-54)||(32910560-32910593)
chr4 (26-55)||(37496718-37496747)
chr4 (22-54)||(2234260-2234292)
chr4 (21-53)||(12077837-12077869)
chr4 (21-53)||(24613719-24613751)
chr4 (26-58)||(28663506-28663538)
[»] chr1 (14 HSPs)
chr1 (21-58)||(11571594-11571631)
chr1 (21-55)||(3921676-3921710)
chr1 (21-54)||(40747790-40747823)
chr1 (24-55)||(14332420-14332451)
chr1 (23-62)||(24701109-24701148)
chr1 (21-55)||(2471229-2471263)
chr1 (13-55)||(7988467-7988509)
chr1 (21-55)||(30847736-30847770)
chr1 (22-55)||(2445880-2445913)
chr1 (21-54)||(6427359-6427392)
chr1 (26-55)||(18946050-18946079)
chr1 (21-54)||(29230074-29230107)
chr1 (21-54)||(41017421-41017454)
chr1 (21-53)||(42325569-42325601)
[»] chr8 (19 HSPs)
chr8 (21-55)||(29198495-29198529)
chr8 (21-54)||(34201063-34201096)
chr8 (22-54)||(10441213-10441245)
chr8 (16-55)||(3508056-3508095)
chr8 (21-55)||(12985401-12985435)
chr8 (21-55)||(37225759-37225793)
chr8 (21-55)||(40063960-40063994)
chr8 (21-54)||(1639499-1639532)
chr8 (22-55)||(7616865-7616898)
chr8 (21-54)||(14740739-14740772)
chr8 (26-55)||(31119101-31119130)
chr8 (21-54)||(31236594-31236627)
chr8 (26-55)||(42874536-42874565)
chr8 (21-53)||(1591308-1591340)
chr8 (23-51)||(3520105-3520133)
chr8 (26-58)||(6960689-6960721)
chr8 (21-53)||(14227231-14227263)
chr8 (21-53)||(29447128-29447160)
chr8 (13-53)||(38902485-38902525)
[»] chr5 (15 HSPs)
chr5 (21-55)||(11596471-11596505)
chr5 (23-55)||(43208290-43208322)
chr5 (21-52)||(28296337-28296368)
chr5 (13-52)||(32428945-32428984)
chr5 (21-55)||(2039865-2039899)
chr5 (21-55)||(18607113-18607147)
chr5 (13-55)||(30080517-30080559)
chr5 (21-55)||(31264447-31264481)
chr5 (24-54)||(41558671-41558701)
chr5 (21-54)||(30098335-30098368)
chr5 (21-54)||(38749580-38749613)
chr5 (21-62)||(39424650-39424691)
chr5 (21-53)||(9449478-9449510)
chr5 (18-54)||(40097617-40097653)
chr5 (21-53)||(41558701-41558733)
[»] chr2 (12 HSPs)
chr2 (21-55)||(18570981-18571015)
chr2 (21-54)||(40681991-40682024)
chr2 (21-53)||(30563418-30563450)
chr2 (21-59)||(10254036-10254074)
chr2 (21-55)||(10535775-10535809)
chr2 (21-55)||(31026704-31026738)
chr2 (13-54)||(4332927-4332968)
chr2 (21-54)||(12933753-12933786)
chr2 (21-54)||(19613630-19613663)
chr2 (13-54)||(37497121-37497162)
chr2 (26-55)||(43586021-43586050)
chr2 (21-54)||(44605156-44605189)
[»] chr6 (22 HSPs)
chr6 (22-55)||(9024192-9024225)
chr6 (21-53)||(2140499-2140531)
chr6 (23-55)||(10157995-10158027)
chr6 (21-56)||(8148129-8148164)
chr6 (21-55)||(4859129-4859163)
chr6 (20-54)||(9629391-9629425)
chr6 (21-59)||(10395457-10395495)
chr6 (13-55)||(19602197-19602239)
chr6 (21-55)||(29049894-29049928)
chr6 (21-55)||(34446574-34446608)
chr6 (21-54)||(6299521-6299554)
chr6 (21-54)||(6306331-6306364)
chr6 (26-55)||(6751898-6751927)
chr6 (21-54)||(9617443-9617476)
chr6 (26-55)||(10031584-10031613)
chr6 (26-55)||(19369831-19369860)
chr6 (21-54)||(30866161-30866194)
chr6 (21-54)||(33076417-33076450)
chr6 (23-55)||(10335392-10335424)
chr6 (21-53)||(17168903-17168935)
chr6 (26-54)||(29959189-29959217)
chr6 (16-52)||(32299279-32299315)
[»] scaffold0571 (1 HSPs)
scaffold0571 (15-55)||(7693-7733)
[»] chr3 (13 HSPs)
chr3 (15-55)||(20691322-20691362)
chr3 (21-55)||(9210841-9210875)
chr3 (13-55)||(11093571-11093613)
chr3 (21-55)||(12704673-12704707)
chr3 (21-55)||(21149076-21149110)
chr3 (24-54)||(40017386-40017416)
chr3 (21-55)||(40150587-40150621)
chr3 (21-55)||(52369784-52369818)
chr3 (21-54)||(9624650-9624683)
chr3 (21-54)||(21110480-21110513)
chr3 (21-54)||(32166200-32166233)
chr3 (21-54)||(41319327-41319360)
chr3 (21-53)||(16789668-16789700)
[»] scaffold0037 (1 HSPs)
scaffold0037 (21-54)||(102914-102947)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-54)||(225285-225318)
[»] scaffold0598 (1 HSPs)
scaffold0598 (21-53)||(8071-8103)
[»] scaffold0024 (1 HSPs)
scaffold0024 (26-58)||(18121-18153)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 30516415 - 30516147
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatcgcatctgaaaccatcggcgtcagacatatcttccacccgaagtgtgggtgtttacga 112  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30516415 acactaacaataatttgagaaaatgatataattcaatgtaatcgcatctgaaaccatcggtgtcagacatatcttccacccgaagtgtgggtgtttacga 30516316  T
Q  113 gtgatcacaacatactattttacaaaaatgaaatacgagttaatgaaatgtagtgtaagtgtaagatacctcataattagtgataacaccattgtgaaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30516315 gtgatcacaacatactattttacaaaaatgaaatacgagttaatgaaatgtagtgtaagtgtaagatacctcataattagtgatcacaccattgtgaaca 30516216  T
Q  213 accatgaactcattagcaggacctgaagtttgtggatgactattcctgggagcaggctcaccatgtgta 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30516215 accatgaactcattagcaggacctgaagtttgtggatgactattcctgggagcaggctcaccatgtgta 30516147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 38134456 - 38134422
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  38134456 aataatttgagaaaatgacataattcaatgtaatc 38134422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 44172940 - 44172906
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  44172940 aataatttgagaaaatgacataattcaatgtaatc 44172906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 10893395 - 10893359
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatcgcat 59  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10893395 taatttgagaaaatgacataattgaatgtaatcgcat 10893359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 21247792 - 21247752
Alignment:
Q  15 actgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  21247792 actgataataatttgagaaaatgacgtaattcaatgtaatc 21247752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 36314687 - 36314643
Alignment:
Q  11 acacactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||    
T  36314687 acacactcataataatttgagaaaatgacatatttcaatgtaatc 36314643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 19930992 - 19930958
Alignment:
Q  20 caataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||| |||||||||||||||||||||||    
T  19930992 caataatttgataaaatgacataattcaatgtaat 19930958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 2143898 - 2143869
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  2143898 tttgagaaaatgacataattcaatgtaatc 2143869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 2144584 - 2144555
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  2144584 tttgagaaaatgacataattcaatgtaatc 2144555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 5937466 - 5937437
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  5937466 tttgagaaaatgacataattcaatgtaatc 5937437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 7133327 - 7133294
Alignment:
Q  22 ataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||| |||||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatc 7133294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 12278836 - 12278877
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||| |||||||| |||||||||||||||||| ||||||    
T  12278836 acactgataataatttaagaaaatgacataattcagtgtaat 12278877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 23165327 - 23165286
Alignment:
Q  10 gacacactgacaataatttgagaaaatgacataattcaatgt 51  Q
    |||||| |||||||||| |||||||||||||| |||||||||    
T  23165327 gacacattgacaataatctgagaaaatgacatgattcaatgt 23165286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 41229356 - 41229323
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  41229356 acaccgacaataatttgagaaaatgacataattc 41229323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 3119407 - 3119439
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||| |||||||||    
T  3119407 taatttgagaaaatgacataattgaatgtaatc 3119439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 18233659 - 18233615
Alignment:
Q  10 gacacactgacaataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||| || | ||||||||||||||||||||||||| ||||||    
T  18233659 gacacacagatagtaatttgagaaaatgacataattcagtgtaat 18233615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 23930230 - 23930262
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||| |||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatc 23930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 37775993 - 37776025
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||| |||||||||    
T  37775993 taatttgagaaaatgacataattaaatgtaatc 37776025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 41360911 - 41360951
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaa 53  Q
    ||||||| | |||||||||||||| ||||||||||||||||    
T  41360911 acactgatattaatttgagaaaataacataattcaatgtaa 41360951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 5654649 - 5654607
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  5654649 acactgataataatttgagaaaatgacataattcaatgtaatc 5654607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 10546157 - 10546191
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  10546157 aataatttgagaaaatgacataattcaatgtaatc 10546191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 18513291 - 18513257
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  18513291 aataatttgagaaaatgacataattcaatgtaatc 18513257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 11110209 - 11110246
Alignment:
Q  18 gacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  11110209 gacaataatttgagaaaatgacataattcgatgtaatc 11110246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 43188613 - 43188650
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatg 50  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43188613 acactgataataatttgagaaaatgacataattcaatg 43188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 44797020 - 44796979
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaat 54  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  44797020 acaccgacaataatttgagaaaataacataattcaatgtaat 44796979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 26276058 - 26276026
Alignment:
Q  22 ataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||||||||||||||||||    
T  26276058 ataatttgagaaaatgacataattcaatgtaat 26276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 34589753 - 34589722
Alignment:
Q  24 aatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||||    
T  34589753 aatttgagaaaatgacataattcaatgtaatc 34589722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 2976703 - 2976737
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  2976703 aataatttgagaaaatgacataattgaatgtaatc 2976737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 8457934 - 8457968
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  8457934 aataatttgagaaaatgacataattgaatgtaatc 8457968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 9996841 - 9996875
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattca 47  Q
    |||||||||||||||||||||||| ||||||||||    
T  9996841 acactgacaataatttgagaaaatcacataattca 9996875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 14465344 - 14465310
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||| |||||    
T  14465344 aataatttgagaaaatgacataattcaatttaatc 14465310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 20743328 - 20743294
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  20743328 aataatttgagaaaatgacataattcagtgtaatc 20743294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 31243598 - 31243564
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  31243598 aataatttgagaaaatgacataattcagtgtaatc 31243564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 43300021 - 43299987
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  43300021 aataatttgagaaaattacataattcaatgtaatc 43299987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 43300625 - 43300659
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  43300625 aataatttgagaaaattacataattcaatgtaatc 43300659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 46180994 - 46180952
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||| ||||||||||||||||||| |||||||||| |||||||    
T  46180994 acacagacaataatttgagaaaataacataattcagtgtaatc 46180952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 51673500 - 51673458
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||    
T  51673500 acactgataataattggagaaaatgacataattcattgtaatc 51673458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 13307891 - 13307920
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  13307891 tttgagaaaatgacataattcaatgtaatc 13307920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 19230359 - 19230326
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  19230359 aataatttgagaaaataacataattcaatgtaat 19230326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 32910560 - 32910593
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||||| ||||||    
T  32910560 aataatttgagaaaatgacataattcagtgtaat 32910593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 37496718 - 37496747
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  37496718 tttgagaaaatgacataattcaatgtaatc 37496747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 2234260 - 2234292
Alignment:
Q  22 ataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||| |||||||||||||||||    
T  2234260 ataatttgagaaaatcacataattcaatgtaat 2234292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 12077837 - 12077869
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||| ||||||||||||||||    
T  12077837 aataatttgagaaaatcacataattcaatgtaa 12077869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 24613751 - 24613719
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||| ||||||||||||||||    
T  24613751 aataatttgagaaaatcacataattcaatgtaa 24613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 28663506 - 28663538
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatcgca 58  Q
    |||||||||||||||||||||||||||| ||||    
T  28663506 tttgagaaaatgacataattcaatgtaaacgca 28663538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 11571594 - 11571631
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatcgca 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11571594 aataatttgagaaaatgacataattcaatgtaatcgca 11571631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 3921676 - 3921710
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  3921676 aataatttgagaaaatgacataattcaatgtaatc 3921710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 40747823 - 40747790
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||||||||||||    
T  40747823 aataatttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 14332420 - 14332451
Alignment:
Q  24 aatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||||    
T  14332420 aatttgagaaaatgacataattcaatgtaatc 14332451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 24701148 - 24701109
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatcgcatctg 62  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  24701148 taatttgaaaaaatgacataattgaatgtaatcgcatctg 24701109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 2471263 - 2471229
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||| ||||||||||||||||    
T  2471263 aataatttgagaaaatgagataattcaatgtaatc 2471229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 7988509 - 7988467
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||    
T  7988509 acactgataataatttaagaaagtgacataattcaatgtaatc 7988467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 30847770 - 30847736
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  30847770 aataatttgaaaaaatgacataattcaatgtaatc 30847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 2445880 - 2445913
Alignment:
Q  22 ataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||| |||||    
T  2445880 ataatttgagaaaatgacataattcaatttaatc 2445913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6427359 - 6427392
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  6427359 aataatttgagaaaatcacataattcaatgtaat 6427392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 18946079 - 18946050
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  18946079 tttgagaaaatgacataattcaatgtaatc 18946050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 29230074 - 29230107
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  29230074 aataatttgagaaaatgacataattgaatgtaat 29230107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 41017454 - 41017421
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  41017454 aataatttgagaaaatgacataatttaatgtaat 41017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 42325569 - 42325601
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    ||||||||||||||||||||||||||| |||||    
T  42325569 aataatttgagaaaatgacataattcagtgtaa 42325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 29198529 - 29198495
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  29198529 aataatttgagaaaatgacataattcaatgtaatc 29198495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 34201096 - 34201063
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||||||||||||    
T  34201096 aataatttgagaaaatgacataattcaatgtaat 34201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 10441213 - 10441245
Alignment:
Q  22 ataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||||||||||||||||||    
T  10441213 ataatttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 3508056 - 3508095
Alignment:
Q  16 ctgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  3508056 ctgataataatttgagaaaataacataattcaatgtaatc 3508095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 12985401 - 12985435
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  12985401 aataatttgagaaaatcacataattcaatgtaatc 12985435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 37225793 - 37225759
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  37225793 aataatttgagaaaataacataattcaatgtaatc 37225759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 40063960 - 40063994
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  40063960 aataatttgagaaaatgacataattcattgtaatc 40063994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 1639499 - 1639532
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||| |||||||||||||||||||||||||||||    
T  1639499 aatattttgagaaaatgacataattcaatgtaat 1639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 7616898 - 7616865
Alignment:
Q  22 ataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||| ||||||||||||||    
T  7616898 ataatttgagaaaatgacacaattcaatgtaatc 7616865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 14740739 - 14740772
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||| |||||||||||||||||||||||||||    
T  14740739 aataatgtgagaaaatgacataattcaatgtaat 14740772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 31119101 - 31119130
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  31119101 tttgagaaaatgacataattcaatgtaatc 31119130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 31236627 - 31236594
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  31236627 aataatttgagaaaatcacataattcaatgtaat 31236594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 42874536 - 42874565
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  42874536 tttgagaaaatgacataattcaatgtaatc 42874565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 1591308 - 1591340
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||| ||||||||||||||||||||||||||||    
T  1591308 aatattttgagaaaatgacataattcaatgtaa 1591340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 3520133 - 3520105
Alignment:
Q  23 taatttgagaaaatgacataattcaatgt 51  Q
    |||||||||||||||||||||||||||||    
T  3520133 taatttgagaaaatgacataattcaatgt 3520105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 6960721 - 6960689
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatcgca 58  Q
    |||||||||||||||||||| ||||||||||||    
T  6960721 tttgagaaaatgacataatttaatgtaatcgca 6960689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 14227231 - 14227263
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||| ||||||||||||||||    
T  14227231 aataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 29447160 - 29447128
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||| ||||||||||||||||    
T  29447160 aataatttgagaaaatcacataattcaatgtaa 29447128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 38902485 - 38902525
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaa 53  Q
    |||| ||||||||| |||||||||||||||||| |||||||    
T  38902485 acaccgacaataatatgagaaaatgacataattaaatgtaa 38902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 11596505 - 11596471
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  11596505 aataatttgagaaaatgacataattcaatgtaatc 11596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 43208322 - 43208290
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||    
T  43208322 taatttgagaaaatgacataattcaatgtaatc 43208290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 28296337 - 28296368
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgta 52  Q
    ||||||||||||||||||||||||||||||||    
T  28296337 aataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 32428984 - 32428945
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgta 52  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  32428984 acactgataataatttgagaaagtgacataattcaatgta 32428945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 2039899 - 2039865
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||| |||||||||||||    
T  2039899 aataatttgagaaaatgacatgattcaatgtaatc 2039865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 18607147 - 18607113
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  18607147 aataatttgagaaaataacataattcaatgtaatc 18607113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 30080559 - 30080517
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||| || | ||||||||||||||||||||||||||||||    
T  30080559 acactgataaaattttgagaaaatgacataattcaatgtaatc 30080517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 31264447 - 31264481
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  31264447 aataatttgagaaaatgacataattcagtgtaatc 31264481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 41558701 - 41558671
Alignment:
Q  24 aatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||||||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaat 41558671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 30098335 - 30098368
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  30098335 aataatttgagaaaatcacataattcaatgtaat 30098368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 38749613 - 38749580
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||| |||||||||||||||||||||||    
T  38749613 aataatttgaaaaaatgacataattcaatgtaat 38749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 39424650 - 39424691
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatcgcatctg 62  Q
    ||||||||||||||||||||| |||||||||| || ||||||    
T  39424650 aataatttgagaaaatgacatgattcaatgtattcacatctg 39424691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 9449478 - 9449510
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||| ||||||||||||||||    
T  9449478 aataatttgagaaaatcacataattcaatgtaa 9449510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 40097653 - 40097617
Alignment:
Q  18 gacaataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  40097653 gacaataatctgagaaaatgatataattcaatgtaat 40097617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 41558733 - 41558701
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||||||||||||||| ||||    
T  41558733 aataatttgagaaaatgacataattcaaagtaa 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 18570981 - 18571015
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  18570981 aataatttgagaaaatgacataattcaatgtaatc 18571015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 40681991 - 40682024
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||||||||||||    
T  40681991 aataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 30563418 - 30563450
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  30563418 aataatttgagaaaatgacataattcaatgtaa 30563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 10254036 - 10254074
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatcgcat 59  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  10254036 aataattgtagaaaatgacataattcaatgtaatcgcat 10254074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 10535809 - 10535775
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  10535809 aataatttgagaaaatgacataattcagtgtaatc 10535775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 31026704 - 31026738
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||| ||||||||||||||||||||||||||    
T  31026704 aataatttaagaaaatgacataattcaatgtaatc 31026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 4332927 - 4332968
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||| ||||||||| |||||| |||||||||||||||||    
T  4332927 acactgataataatttgggaaaatcacataattcaatgtaat 4332968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 12933786 - 12933753
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||| |||||||||||||||||||||||||    
T  12933786 aataatttaagaaaatgacataattcaatgtaat 12933753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 19613663 - 19613630
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  19613663 aataatttgagaaaataacataattcaatgtaat 19613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 37497121 - 37497162
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||| ||||||||||||||||| || |||||||||||||    
T  37497121 acactgataataatttgagaaaatgccacaattcaatgtaat 37497162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 43586050 - 43586021
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  43586050 tttgagaaaatgacataattcaatgtaatc 43586021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 44605189 - 44605156
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  44605189 aataatttgagaaaataacataattcaatgtaat 44605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 9024225 - 9024192
Alignment:
Q  22 ataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatc 9024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 2140531 - 2140499
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  2140531 aataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 10157995 - 10158027
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatc 10158027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 8148129 - 8148164
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatcg 56  Q
    ||||||||||||||||||||||||| ||||||||||    
T  8148129 aataatttgagaaaatgacataattgaatgtaatcg 8148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 4859163 - 4859129
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||| ||||||||||    
T  4859163 aataatttgagaaaatgacataatccaatgtaatc 4859129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 9629391 - 9629425
Alignment:
Q  20 caataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||| |||||||||||||||||    
T  9629391 caataatttgagaaaatcacataattcaatgtaat 9629425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 10395457 - 10395495
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatcgcat 59  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  10395457 aataatttcagaaaatggcataattcaatgtaatcgcat 10395495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 19602239 - 19602197
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||| |||||||||||||||||| |||||||| |||||||    
T  19602239 acactgataataatttgagaaaatgatataattcagtgtaatc 19602197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 29049894 - 29049928
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  29049894 aataatttgagaaaattacataattcaatgtaatc 29049928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 34446574 - 34446608
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  34446574 aataatttgagaaaatgacataattcagtgtaatc 34446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6299521 - 6299554
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||| |||||||||||||||    
T  6299521 aataatttgagaaaatgatataattcaatgtaat 6299554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6306331 - 6306364
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||| |||||||||||||||    
T  6306331 aataatttgagaaaatgatataattcaatgtaat 6306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 6751927 - 6751898
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  6751927 tttgagaaaatgacataattcaatgtaatc 6751898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 9617443 - 9617476
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  9617443 aataatttgagaaaatcacataattcaatgtaat 9617476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 10031584 - 10031613
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  10031584 tttgagaaaatgacataattcaatgtaatc 10031613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 19369831 - 19369860
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||||||    
T  19369831 tttgagaaaatgacataattcaatgtaatc 19369860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 30866194 - 30866161
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  30866194 aataatttgagaaaatcacataattcaatgtaat 30866161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 33076417 - 33076450
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  33076417 aataatttgagaaaatgacataattgaatgtaat 33076450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 10335424 - 10335392
Alignment:
Q  23 taatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||| |||||||||    
T  10335424 taatttgagaaaatgacataattgaatgtaatc 10335392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 17168903 - 17168935
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    |||||||||| ||||||||||||||||||||||    
T  17168903 aataatttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 29959189 - 29959217
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||||||||||||||    
T  29959189 tttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 32299279 - 32299315
Alignment:
Q  16 ctgacaataatttgagaaaatgacataattcaatgta 52  Q
    |||| |||||||||||||||| |||||||||||||||    
T  32299279 ctgataataatttgagaaaatcacataattcaatgta 32299315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 7693 - 7733
Alignment:
Q  15 actgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  7693 actgataataatttgagaaaatgacataattcaatgcaatc 7733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 20691322 - 20691362
Alignment:
Q  15 actgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  20691322 actgataataatttgagaaaatgacataattcagtgtaatc 20691362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 9210875 - 9210841
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||||||||||||||| ||||    
T  9210875 aataatttgagaaaatgacataattcaatggaatc 9210841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 11093571 - 11093613
Alignment:
Q  13 acactgacaataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||    
T  11093571 acactgataataatttgaaaaaatgacataattcaaagtaatc 11093613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 12704707 - 12704673
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  12704707 aataatttgaaaaaatgacataattcaatgtaatc 12704673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 21149076 - 21149110
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  21149076 aataatttgagaaaatgacataattcagtgtaatc 21149110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 40017416 - 40017386
Alignment:
Q  24 aatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||||||||||||||||    
T  40017416 aatttgagaaaatgacataattcaatgtaat 40017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 40150621 - 40150587
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||||| ||||||||||||||||    
T  40150621 aataatttgagaaaatgatataattcaatgtaatc 40150587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 52369784 - 52369818
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaatc 55  Q
    |||||||||||||||| ||||||||||||||||||    
T  52369784 aataatttgagaaaattacataattcaatgtaatc 52369818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 9624650 - 9624683
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||| |||||||||||||||||    
T  9624650 aataatttgagaaaatcacataattcaatgtaat 9624683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 21110513 - 21110480
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  21110513 aataatttgagaaaatgacataattgaatgtaat 21110480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 32166233 - 32166200
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  32166233 aataatttgagaaaatgacataattgaatgtaat 32166200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 41319360 - 41319327
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||| |||||||||||||||||||||||    
T  41319360 aataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 16789700 - 16789668
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    ||||||||||||||||||||||||||| |||||    
T  16789700 aataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 102914 - 102947
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||| |||||||||||||||    
T  102914 aataatttgagaaaatgatataattcaatgtaat 102947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 225318 - 225285
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaat 54  Q
    |||||||||||||||||||||||| |||||||||    
T  225318 aataatttgagaaaatgacataatacaatgtaat 225285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 8103 - 8071
Alignment:
Q  21 aataatttgagaaaatgacataattcaatgtaa 53  Q
    ||||||||||||||||||||||||||| |||||    
T  8103 aataatttgagaaaatgacataattcagtgtaa 8071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 18153 - 18121
Alignment:
Q  26 tttgagaaaatgacataattcaatgtaatcgca 58  Q
    ||||||||||| |||||||||||||||||||||    
T  18153 tttgagaaaataacataattcaatgtaatcgca 18121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University