View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15231_low_30 (Length: 288)
Name: NF15231_low_30
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 43865139 - 43864876
Alignment:
| Q |
18 |
acttatttgtacttgacccaaaaaagaatactgcagcttattattaaacaaagttaccttgagatttaatatttggtttgttttnnnnnnnn-tatataa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43865139 |
acttatttgtacttgacccaaaaaagaatactgcagcttattattaaacaaagttaccttgagatttaatatttggtttgttttaaaaaaatatatataa |
43865040 |
T |
|
| Q |
117 |
gaaacggatacaatagatacaaatttaagttgtaaaatttaacatcaaatttaaaagttttgcgtacgatgggtgtctttaatttcaccaactagtcctc |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43865039 |
gaaacggatacaatagacacaaatttaagttgtaaaatttaacatcaaatttaaaagttttgcgtacgatgggtgcctttaatttcaccaactagtcctc |
43864940 |
T |
|
| Q |
217 |
aaaatgttgagtaacaatccagtaacagttttcttaattttttgttaaataatgtgcctttgct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43864939 |
aaaatgttgagtaacaatccagtaacagttttcttaattttttgttaaataatgtgtctttgct |
43864876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University