View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_33 (Length: 270)
Name: NF15231_low_33
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 3145208 - 3145439
Alignment:
| Q |
23 |
tgacaatgttgtctccggtgtccgtgtccataactgtgtttcatagtttcaatttatgccttcaagagaaacccatttaactcatt-gtatgcaaattac |
121 |
Q |
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| T |
3145208 |
tgacaatgttgtctccggtgtccgtgtccatatctgtgtttcatagtttcaatttatgccttcaagagaaacccatttaactcattagtatgcaaattac |
3145307 |
T |
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| Q |
122 |
cactaacatagtttcagtattctattttgtcnnnnnnntaaaataaattctatgttacttttaactgtaaagtgggaaagagagagaggtttaattgaag |
221 |
Q |
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| T |
3145308 |
cactaacatagtttcagtattctattttgttaaaaaaataaaataaattctatgttacttttaactgtaaagtgggaaagagagagaggtttaattgaag |
3145407 |
T |
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| Q |
222 |
gtggtccagccttcaaattgtgagtttctggt |
253 |
Q |
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| T |
3145408 |
gtggtccagccttcaaattgtgagtttctggt |
3145439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 10475023 - 10475086
Alignment:
| Q |
5 |
ttattagcggtgtcggcgtgacaatgttgtctccggtgtccgtgtccataactgtgtttcatag |
68 |
Q |
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| T |
10475023 |
ttattagcggtgtcggcgtgtcaatgtcgtgtccggtgtccgtgttcatatccgtgcttcatag |
10475086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17831573 - 17831622
Alignment:
| Q |
1 |
caaattattagcggtgtcggcgtgacaatgttgtctccggtgtccgtgtc |
50 |
Q |
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| T |
17831573 |
caaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgtc |
17831622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2436939 - 2436893
Alignment:
| Q |
1 |
caaattattagcggtgtcggcgtgacaatgttgtctccggtgtccgt |
47 |
Q |
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| T |
2436939 |
caaattattagcggtgtcggcgtgtcagtgtcgtgtccggtgtccgt |
2436893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21479135 - 21479085
Alignment:
| Q |
1 |
caaattattagcggtgtcggcgtgacaatgttgtctccggtgtccgtgtcc |
51 |
Q |
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| T |
21479135 |
caaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgtcc |
21479085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 14747578 - 14747510
Alignment:
| Q |
1 |
caaattattagcggtgtcggcgtgacaatgttgtctccggtgtccgtgtccataactgtgtttcatagt |
69 |
Q |
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| T |
14747578 |
caaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtatccgtatccgtgcttcatagt |
14747510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 22596010 - 22595965
Alignment:
| Q |
2 |
aaattattagcggtgtcggcgtgacaatgttgtctccggtgtccgt |
47 |
Q |
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| T |
22596010 |
aaattattagctgtgtcggcgtgtcagtgttgtgtccggtgtccgt |
22595965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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