View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_36 (Length: 263)
Name: NF15231_low_36
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_36 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 905838 - 905601
Alignment:
| Q |
17 |
gttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctc |
116 |
Q |
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| T |
905838 |
gttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctc |
905739 |
T |
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| Q |
117 |
tttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaat |
216 |
Q |
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| T |
905738 |
tttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaat |
905639 |
T |
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| Q |
217 |
attttgtaatttacatttgatctttcacatagaattat |
254 |
Q |
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| T |
905638 |
attttgtaatttacatttgatctttcacatagaattat |
905601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 894805 - 895038
Alignment:
| Q |
17 |
gttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |
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| T |
894805 |
gttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaacaaggtttctc |
894904 |
T |
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| Q |
117 |
tttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaat |
216 |
Q |
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| T |
894905 |
tttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacacacatcaagaaat |
895004 |
T |
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| Q |
217 |
attttgtaatttacatttgatctttcacatagaa |
250 |
Q |
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| T |
895005 |
gatttgtactctaaacttgatctttcacatagaa |
895038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 8294757 - 8294951
Alignment:
| Q |
17 |
gttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctc |
116 |
Q |
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||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||||| ||||| || ||||| || |||||||||| ||||||||| |
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| T |
8294757 |
gttgattttccaaccaccttaaacacattgac---atgtttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctc |
8294853 |
T |
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| Q |
117 |
tttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaa |
214 |
Q |
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| | ||||||||||||||||| || || || ||||||||||||||||| | || |||| |||||||| |||| | ||||||||| || ||||||| |
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| T |
8294854 |
tctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacacatcaagaa |
8294951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 33256996 - 33256882
Alignment:
| Q |
19 |
tgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctctt |
118 |
Q |
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||||| ||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||||| || ||||| || ||| |||||| |||||||||| |
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| T |
33256996 |
tgattttccaaccaccttaaacacactgac---atgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctc |
33256900 |
T |
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| Q |
119 |
tttcttgaagaaccctta |
136 |
Q |
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| T |
33256899 |
tgtcttgaagtaccctta |
33256882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 1114 - 1000
Alignment:
| Q |
19 |
tgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctctt |
118 |
Q |
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||||| ||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||||| || ||||| || ||| |||||| |||||||||| |
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| T |
1114 |
tgattttccaaccaccttaaacacactgac---atgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctc |
1018 |
T |
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| Q |
119 |
tttcttgaagaaccctta |
136 |
Q |
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| T |
1017 |
tgtcttgaagtaccctta |
1000 |
T |
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