View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_38 (Length: 260)
Name: NF15231_low_38
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 4299029 - 4299254
Alignment:
| Q |
18 |
attaacacatataaataatgatgcatatatgtgtcggtttaaaaaa-ttataactttgtgtgtatatacaaattaaactcttataaatatttaaatttaa |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4299029 |
attaacacatataaataatgatacatatatgtgtcggtttaaaaaaattataactt-gtgtgtatatacaaattaaactcttataaatatttaaatttaa |
4299127 |
T |
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| Q |
117 |
aataattaggatatatgtttagttttaaggaaatgattttttatgggagagtaaagtgtattgtaatctttgtaccnnnnnnnnnntaaagtgtactgtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
4299128 |
aataattaggatatatgtttagttttaaggaaatgaatttttatgggagagtaaagtgtactgtaatctttgtaccaaaaa------aaagtgtactgtg |
4299221 |
T |
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| Q |
217 |
atgtatgatctttaaccattctaattcatctca |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4299222 |
atgtatgatctttaaccattctaattcatctca |
4299254 |
T |
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