View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_4 (Length: 511)
Name: NF15231_low_4
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 13218321 - 13218406
Alignment:
| Q |
21 |
cagggacgtgctgtaggagtaacccattaccttctgggtggaattgccacaacgtgggcattcttcttagcaagaattattgcagt |
106 |
Q |
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| T |
13218321 |
cagggacgtgctgtaggagtaacccattaccttctgggtggaattgccacaacgtgggcattcttcttagcaagaattattgcagt |
13218406 |
T |
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Target: scaffold0002 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 239385 - 239303
Alignment:
| Q |
24 |
ggacgtgctgtaggagtaacccattaccttctgggtggaattgccacaacgtgggcattcttcttagcaagaattattgcagt |
106 |
Q |
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| T |
239385 |
ggacgtgctgtaggagtaacccattaccttctgggtggaattgccacgacatgggcattcttcttagcgagaattattgcagt |
239303 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 335
Target Start/End: Original strand, 3159007 - 3159170
Alignment:
| Q |
172 |
tgttaataatttattatctgtattgatcatcaaacctgcattgaatttcttgacataattaaaattgttgtttcgttgtcttcttcctggtttggcaaag |
271 |
Q |
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| T |
3159007 |
tgttcataatttattatcagtatcgattgtcaaacctaaattgaatttcttgacataaatatgattgttg-ttggttgccatcttcctggtttagcaagg |
3159105 |
T |
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| Q |
272 |
atgacttattattgttaattt-aaaagctgattttcttggcactataattaggcaaatgtttaac |
335 |
Q |
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| T |
3159106 |
aagtgttgttatagttaatttgcaaagctgtttttcttggcacaataaagaagcaaatgcttaac |
3159170 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 2876380 - 2876281
Alignment:
| Q |
170 |
tgtgttaataatttattatctgtattgatcatcaaacctgcattgaatttcttgacataattaaaattgttgtttcgttgtcttcttcctggtttggcaa |
269 |
Q |
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| T |
2876380 |
tgtgttcattatttataatctgtatctattgtcaaacctaaattaaatttcttgacataaatatgatagttgtttcgttgccatcttcctggtttagcaa |
2876281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 2795384 - 2795452
Alignment:
| Q |
201 |
tcaaacctgcattgaatttcttgacataattaaaattgttgtttcgttgtcttcttcctggtttggcaa |
269 |
Q |
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| T |
2795384 |
tcaaacctaaattgaatttcttgacataaatatgattgttatttggttgccatcttcctggtttagcaa |
2795452 |
T |
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