View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_43 (Length: 239)
Name: NF15231_low_43
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52712550 - 52712330
Alignment:
| Q |
1 |
cacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatga |
100 |
Q |
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| T |
52712550 |
cacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatga |
52712451 |
T |
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| Q |
101 |
tacacaaggtttgattcctccggtacctaaggcaatgagaccaagtgcaccgtacaagaatgagatttgagcttgacttgcttcctggcacggttttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712450 |
tacacaaggtttgattcctccggtacctaaggcaatgagaccaagtgcaccgtacaagaatgagatttgagcttgacttgcttcctggcacggttttgct |
52712351 |
T |
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| Q |
201 |
agacatttttgtgggcgtaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
52712350 |
agacatttttgtgggcgtaat |
52712330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 52721370 - 52721155
Alignment:
| Q |
2 |
acccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgat |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721370 |
acccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgat |
52721271 |
T |
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| Q |
102 |
acacaaggtttgattcctccggtacctaaggcaatgagaccaagtgcaccgtacaagaatgagatttgagcttgacttgcttcctggcacggttttgcta |
201 |
Q |
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| T |
52721270 |
acacaaggcttgattcctcctgtacccaaagcaataaggccaagtgcaccgtacaagaaggagatttggccttgacttgcctccttgcatggtttcgcca |
52721171 |
T |
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| Q |
202 |
gacatttttgtgggcg |
217 |
Q |
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| T |
52721170 |
gacatttctgcgggcg |
52721155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 52698731 - 52698538
Alignment:
| Q |
1 |
cacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatga |
100 |
Q |
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||||||||||||| |||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| || |||||||| || || |
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| T |
52698731 |
cacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgagga |
52698632 |
T |
|
| Q |
101 |
tacacaaggtttgattcctccggtacctaaggcaatgagaccaagtgcaccgtacaagaatgagatttgagcttgacttgcttcctggcacggt |
194 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||| || |||| |||| |||||||| | ||||||| |
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| T |
52698631 |
aacacaaggtttgattcctccagtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggt |
52698538 |
T |
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