View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_5 (Length: 433)
Name: NF15231_low_5
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_5 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 42448739 - 42449144
Alignment:
| Q |
18 |
gtcatcagggtttcagattactttgctcaatacaatatattttcacatttgcatttcatatttctctcaatctcattcccctctagttgcaggaatccac |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42448739 |
gtcattagggtttcagattactttgctcaatacaatatattttcacatttgcatttcatatttctctcaatctcattcccctctagttgcaggaatccac |
42448838 |
T |
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| Q |
118 |
catcggactcggagatggaaaaatcagtgttagttgctgtcactaacgaaaaggtttgcaactatttacctcatgatatagtgctcttcattttgtcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42448839 |
catcggactcggagatggaaaaatcagtgttagttgctgtcactaacgaaaaggtttgcaactatttacctcatgatatagtgctcttcattttgtcaaa |
42448938 |
T |
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| Q |
218 |
acttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaaaatcctcgttttatgaaaatgtacaccgacaatatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42448939 |
acttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttggaaatcctcgttttatgaaaatgtacaccgacaatatc |
42449038 |
T |
|
| Q |
318 |
atccatggtaatcatccttattatgatgatacatttcttgtcctgcacaaattgcttcctaggacatatgaatacagtaatcattgcgagttttattggc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42449039 |
atccatggtaatcatccttattatgatgatacatttcttgtcctgcacaaattgcttcctaggacatatgaatacagtaatcattgcgacttttattggc |
42449138 |
T |
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| Q |
418 |
tctctg |
423 |
Q |
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|||||| |
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| T |
42449139 |
tctctg |
42449144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 20425740 - 20425810
Alignment:
| Q |
211 |
tgtcaaaacttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaa |
281 |
Q |
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| T |
20425740 |
tgtcaaaacttcctttaaaatctttgaaacgatttgaatgcgtatgcaatgcatggtctcttttatttgaa |
20425810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 42261433 - 42261565
Alignment:
| Q |
151 |
ttgctgtcactaacgaaaaggtttgcaactatttacctcatgatatagtgctcttcattttgtcaaaacttcccttaaaatcattgaagagatttcaatg |
250 |
Q |
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| T |
42261433 |
ttgctgtcattgacgaaaaggtttggatcaatttacctcatgatcttgtgctcttcattttgtcaaaactgcctttaaaatcattgaagcggtttatatg |
42261532 |
T |
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| Q |
251 |
cgtatgcaaactatggtctctcttatttgaaaa |
283 |
Q |
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| T |
42261533 |
tgtatgcaaatcatggtctctcttattcgaaaa |
42261565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 51869132 - 51869222
Alignment:
| Q |
208 |
ttttgtcaaaacttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaaaatcctcgttttatgaa |
298 |
Q |
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|||||||||||||||| |||||||| ||||| ||||| ||| | || ||||| ||||||||||||||||||| | |||| ||| ||||| |
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| T |
51869132 |
ttttgtcaaaacttccgttaaaatctttgaaacgatttggatgtgcatacaaaccatggtctctcttatttgaagaccctcatttcatgaa |
51869222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 29136437 - 29136493
Alignment:
| Q |
247 |
aatgcgtatgcaaactatggtctctcttatttgaaaatcctcgttttatgaaaatgt |
303 |
Q |
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| T |
29136437 |
aatgcgtttgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgt |
29136493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 29353390 - 29353315
Alignment:
| Q |
208 |
ttttgtcaaaacttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaaaa |
283 |
Q |
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| T |
29353390 |
ttttgtcaaaacttcctttaaaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttgaaaa |
29353315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 31135920 - 31135842
Alignment:
| Q |
225 |
ttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttgaaaatcctcgttttatgaaaatgt |
303 |
Q |
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||||||| |||||| ||||| ||| |||||||||| ||||||||| ||||||||||| ||| ||||||||| |||| |
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| T |
31135920 |
ttaaaattcttgaagcgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccctatttttatgaacatgt |
31135842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 17191 - 17139
Alignment:
| Q |
228 |
aaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttga |
280 |
Q |
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||||| |||||||||||| ||||||| |||||| ||||||||||||| |||| |
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| T |
17191 |
aaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattga |
17139 |
T |
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