View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15231_low_7 (Length: 428)
Name: NF15231_low_7
Description: NF15231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15231_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 14876675 - 14876441
Alignment:
| Q |
1 |
ttttgaaattcaactaagtataattatttaaatgattattaagtaaccagtgtgtcttgtgctccttgtgtcaaccttattgttacaagtcccgctggtt |
100 |
Q |
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| T |
14876675 |
ttttgaaattcaactaagtataattatttaaatgattattaagtaaccagtgcgtcttgtgctccttgtgtcaaccttatggttacaagtcccgctggtt |
14876576 |
T |
|
| Q |
101 |
gactggcctccacctcatccaatgtctatatttgacatttatgattgcactgccatcctagaaagctaccatgaaaaatttgtgtattggttaccgcatc |
200 |
Q |
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| T |
14876575 |
gactgacctccacctcaaccaatgtctatatttgacatttatgattgcactgccatcctagaaagctaccatgaaaaatttgtgtattggttactgcatc |
14876476 |
T |
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| Q |
201 |
gcttcccagtttgagatctcataattgtattggag |
235 |
Q |
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| T |
14876475 |
gcttcccagtttgagatctaataattgtattggag |
14876441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 14871609 - 14871391
Alignment:
| Q |
1 |
ttttgaaattcaactaagtataattatttaaatgattattaagtaaccagtgtgtcttgtgctccttgtgtcaaccttattgttacaagtcccgctggtt |
100 |
Q |
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| T |
14871609 |
ttttgaaattcaactaagtataattatttaaatgattattaagtaatcagtgcgtcttgtgctccttgtgtcaaccttattgttacaagtcccgctggtt |
14871510 |
T |
|
| Q |
101 |
gactggcctccacctcatccaatgtctatatttgacatttatgattgcactgccatcctagaaagctaccatgaaaaatttgtgtattggttaccgcatc |
200 |
Q |
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| T |
14871509 |
gactgaactccacctcaaccaatgtctatatttgatatttatgattgcactgccatcctagaaagctaccataaaaaatttgtgtattggttaccgcatc |
14871410 |
T |
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| Q |
201 |
gcttcccagtttgagatct |
219 |
Q |
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| T |
14871409 |
gcttcccagtttgtgatct |
14871391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 14876380 - 14876265
Alignment:
| Q |
296 |
cttcaagtttgtattatatatgttcgatgaaatgttggagactgactcgttttttaggatcatattttgagtaaagagcttattgtgattatcattaaat |
395 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14876380 |
cttcaagtttgtattatatgtgttcgatgaaatgttggagactgacttgttttttaggatcatattttgagtaaagagcttattgtgattatcatcaaat |
14876281 |
T |
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| Q |
396 |
tcaacattctttcatt |
411 |
Q |
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| T |
14876280 |
tcaacattctttcatt |
14876265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 25101313 - 25101262
Alignment:
| Q |
358 |
tattttgagtaaagagcttattgtgattatcattaaattcaacattctttca |
409 |
Q |
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| T |
25101313 |
tattttgagtaaggagcttactgtggttatcaccaaattcaacattctttca |
25101262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 405
Target Start/End: Original strand, 6000846 - 6000893
Alignment:
| Q |
358 |
tattttgagtaaagagcttattgtgattatcattaaattcaacattct |
405 |
Q |
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| T |
6000846 |
tattttgagtaaagaaattattgtgattatcactaaatttaacattct |
6000893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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