View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15232_high_12 (Length: 242)

Name: NF15232_high_12
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15232_high_12
NF15232_high_12
[»] chr1 (5 HSPs)
chr1 (9-199)||(29453615-29453805)
chr1 (9-193)||(29443638-29443831)
chr1 (9-108)||(29422935-29423034)
chr1 (32-105)||(29468200-29468273)
chr1 (143-193)||(29468097-29468147)
[»] chr2 (23 HSPs)
chr2 (9-179)||(9315641-9315809)
chr2 (9-138)||(11987865-11987995)
chr2 (9-138)||(12012927-12013057)
chr2 (51-193)||(10371503-10371644)
chr2 (21-181)||(9284540-9284703)
chr2 (9-151)||(9320593-9320736)
chr2 (30-181)||(9294990-9295144)
chr2 (9-182)||(9364239-9364409)
chr2 (9-120)||(12019285-12019394)
chr2 (9-103)||(9291560-9291655)
chr2 (15-193)||(10347401-10347571)
chr2 (9-151)||(9328222-9328355)
chr2 (9-67)||(12006543-12006601)
chr2 (25-151)||(9061545-9061675)
chr2 (9-110)||(8573934-8574038)
chr2 (25-100)||(9274200-9274276)
chr2 (36-149)||(9272296-9272410)
chr2 (9-71)||(10352732-10352794)
chr2 (9-110)||(9066041-9066141)
chr2 (122-171)||(9291655-9291704)
chr2 (115-192)||(10335589-10335665)
chr2 (26-70)||(10341038-10341082)
chr2 (15-70)||(19393258-19393318)
[»] scaffold0667 (1 HSPs)
scaffold0667 (9-149)||(4067-4208)
[»] chr3 (1 HSPs)
chr3 (9-151)||(37462092-37462236)
[»] chr8 (1 HSPs)
chr8 (9-185)||(41967066-41967242)
[»] chr4 (1 HSPs)
chr4 (16-71)||(26574525-26574580)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 29453805 - 29453615
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttgcttttaacataaagtttaactgcatatatcatatgat 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29453805 aaacttaggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttacttttaacataaagtttaactgcatatatcatatgat 29453706  T
Q  109 ggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattctctgtcct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  29453705 ggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtataattctctttcct 29453615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 29443831 - 29443638
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattca-------atttg--cttttaacataaagtttaactgcatata 99  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||       |||||  ||||||||||  |||||||||  |||||    
T  29443831 aaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatata 29443732  T
Q  100 tcatatgatggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattctc 193  Q
    ||||||||||| || |||||| ||| ||||||||||||| || |||||||||| |||| |||||| ||||||||||||||||||| ||||||||    
T  29443731 tcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctc 29443638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 29422935 - 29423034
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg--cttttaacataaagtttaactgcatatatcatatg 106  Q
    ||||| |||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||  ||||||||  | |||||||||  ||||||||||||    
T  29422935 aaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaatttgaccttttaac--agagtttaactagatatatcatatg 29423032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 29468273 - 29468200
Alignment:
Q  32 taattagagaatccttgttctataataagaattcaatttg--cttttaacataaagtttaactgcatatatcatat 105  Q
    ||||||||||||| |||| |||||||||||||||||||||  ||||||||  | ||||||||||||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaatttgaccttttaac--agagtttaactgcatatatcatat 29468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 29468147 - 29468097
Alignment:
Q  143 aaaaactcagataataaataaggagtaccttctcttgcttgtatgattctc 193  Q
    ||||||||||| ||| |||||| |||||||||||||||||||  |||||||    
T  29468147 aaaaactcagacaatcaataagaagtaccttctcttgcttgtgcgattctc 29468097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 9315641 - 9315809
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||| | |||| |||| ||||||||| | ||||||||||||    
T  9315641 aaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatatga 9315740  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttg 179  Q
    ||| || |||||||||| ||||||||||||| |||||||||||| |||||| |||   ||||||||||||||    
T  9315741 tgggtccattgaactgacattaacttatacatagcaaaaactcaaataatatata---agtaccttctcttg 9315809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 11987995 - 11987865
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| | ||||||||||||||||||| ||||||||| ||||    
T  11987995 aaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatatatcacatga 11987896  T
Q  108 tggatctattgaactgaaattaacttataca 138  Q
    ||| || |||||| ||| |||||||||||||    
T  11987895 tgggtccattgaattgatattaacttataca 11987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 12013057 - 12012927
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||  ||| ||||| ||||||||||||||    
T  12013057 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacctttaacatggagtctaactacatatatcatatga 12012958  T
Q  108 tggatctattgaactgaaattaacttataca 138  Q
    ||| || |||||| ||| |||||||||||||    
T  12012957 tgggtccattgaattgatattaacttataca 12012927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 10371503 - 10371644
Alignment:
Q  51 ctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaacttatacagagcaaaaact 149  Q
    |||| |||||||||||||||| | ||||||| | ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| | ||||||||    
T  10371503 ctatgataagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaact 10371602  T
Q  150 cagataataaataaggagtaccttctcttgcttgtatgattctc 193  Q
    ||| ||  ||| ||  ||||||||||||||||||||||||||||    
T  10371603 cagtta--aaacaataagtaccttctcttgcttgtatgattctc 10371644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 9284703 - 9284540
Alignment:
Q  21 agacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattga 119  Q
    |||| ||||||||||| |||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||||| |||| || ||||||||| || ||| |    
T  9284703 agacatcaaagtaattggagactccttgtccgataataagaattcaatttgacctttaatataaagtttaactacataaattatatgatgggtccattaa 9284604  T
Q  120 actgaaattaacttatacagagc-aaaaactcagataataaat-aaggagtaccttctcttgct 181  Q
    ||| ||||||||||||||| ||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  9284603 actaaaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgct 9284540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 9320593 - 9320736
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| |||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||| | | || |||| |||||||||  |||||||||||||    
T  9320593 aaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacctatagcatagagtttaacttaatatatcatatga 9320692  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactca 151  Q
    ||| || |||||| ||| || |||| ||||| ||||||||||||    
T  9320693 tgggtccattgaattgacatcaactaatacatagcaaaaactca 9320736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 9295144 - 9294990
Alignment:
Q  30 agtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaatt 128  Q
    ||||||||||||| || ||| ||||||||||||||||||||| | |||| |||| ||||||||  |||| || ||||||||| || ||| |||| |||||    
T  9295144 agtaattagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaatt 9295045  T
Q  129 aacttatacagagc-aaaaactcagataataaat-aaggagtaccttctcttgct 181  Q
    |||||||||| ||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  9295044 aacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgct 9294990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 9364239 - 9364409
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||| | ||||| ||| ||||||| | ||||||||||||||    
T  9364239 aaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatga 9364338  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgctt 182  Q
    ||| |  ||||||| || || | |||||||| |||||| ||||||||||  || |||   |||||||||||||||    
T  9364339 tgggttcattgaacggatat-agcttatacacagcaaagactcagataaacaacaag---taccttctcttgctt 9364409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 12019394 - 12019285
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttgcttttaacataaagtttaactgcatatatcatatgat 108  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |     |||||||| ||||||||| |||||||||||||||    
T  12019394 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaat--acattaacatagagtttaactacatatatcatatgat 12019297  T
Q  109 ggatctattgaa 120  Q
    || || ||||||    
T  12019296 gggtccattgaa 12019285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 9291560 - 9291655
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaattt-gcttttaacataaagtttaactgcatatatcat 103  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | |||| |||| ||||||||| ||| ||||||    
T  9291560 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcat 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 10347401 - 10347571
Alignment:
Q  15 aggtagagacttcaaagtaattagagaatcct-tgttctataataagaattcaatttgcttttaacataaagtttaactgcatatatcatatgatggatc 113  Q
    ||||| ||||||||||||||||||| ||| || | | |||| ||||||||||||||||        ||| ||||||||||||||||| |||||||   ||    
T  10347401 aggtaaagacttcaaagtaattagaaaatactctatcctatgataagaattcaatttg--------atagagtttaactgcatatatgatatgataagtc 10347492  T
Q  114 tattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattctc 193  Q
     |||||||||| || |||||||||| | ||||||||||| |||  |||||| |||||||||||||||||| |||||||||    
T  10347493 cattgaactgatat-aacttatacacaacaaaaactcagttaaacaataagaagtaccttctcttgcttggatgattctc 10347571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 9328222 - 9328355
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||||||||||||||||||||||        ||||  ||||||||||||||| | |||| |||| ||||||||| ||||||||||||||    
T  9328222 aaacaaaggtagagacttcaaagtaattagagaa--------ctat--taagaattcaatttgacctttagcatagagtttaacttcatatatcatatga 9328311  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactca 151  Q
     || || |||||| ||| || |||||||||| ||||||||||||    
T  9328312 cgggtccattgaattgacatcaacttatacatagcaaaaactca 9328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 12006601 - 12006543
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaa 67  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  12006601 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaa 12006543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 9061675 - 9061545
Alignment:
Q  25 ttcaaagtaattagagaatc-----cttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattg 118  Q
    ||||||||||||||||||||     ||||| |||||| |||||||||||||  | |||| |||| ||||||||| ||||||| |||||||||  | ||||    
T  9061675 ttcaaagtaattagagaatcaaatccttgtcctataacaagaattcaatttaacctttagcatagagtttaactacatatattatatgatgg--ccattg 9061578  T
Q  119 aactgaaattaacttatacagagcaaaaactca 151  Q
    |||||| || |||||||||| ||||||||||||    
T  9061577 aactgacatcaacttatacatagcaaaaactca 9061545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 8574038 - 8573934
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttcta--taataagaattcaatttg-cttttaacataaagtttaactgcatatatcatat 105  Q
    ||||| ||||| | ||||||||||||||||||||||||||| |||  | ||||||||| |||||| | |||| |||| ||||||||  ||||||||||||    
T  8574038 aaacaaaggtataaacttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacctttagcatagagtttaaccacatatatcatat 8573939  T
Q  106 gatgg 110  Q
    |||||    
T  8573938 gatgg 8573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 9274200 - 9274276
Alignment:
Q  25 ttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatat 100  Q
    |||||||||||||| |||||||||| |||||||||||||||||  || | |||| |||||||||||||| |||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaacatgacctttagcataaagtttaactacatatat 9274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 9272296 - 9272410
Alignment:
Q  36 tagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaactta 134  Q
    |||||||||||  ||||||||||||||||||||| | | |||| |||   |||||| |||| | |||||||||||| |  ||| |||||| |||||||||    
T  9272296 tagagaatcctatttctataataagaattcaattagacctttagcattgggtttaattgcaaagatcatatgatgggttcattaaactgacattaactta 9272395  T
Q  135 tacagagcaaaaact 149  Q
    |||| ||||||||||    
T  9272396 tacatagcaaaaact 9272410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 10352732 - 10352794
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg 71  Q
    ||||| ||||| |||| |||||||||||||||||||||| | |||| ||||||||||||||||    
T  10352732 aaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttg 10352794  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 9066141 - 9066041
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||| |||||||||||||||||||||| || | |||| |||||| ||||||||| | || | |  |||||||| || ||||||||||||||    
T  9066141 aaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagc--aaagtttagctacatatatcatatga 9066044  T
Q  108 tgg 110  Q
    |||    
T  9066043 tgg 9066041  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 9291655 - 9291704
Alignment:
Q  122 tgaaattaacttatacagagcaaaaactcagataataaataaggagtacc 171  Q
    |||||||| |||||| | |||||||||||||||||| |||||| ||||||    
T  9291655 tgaaattagcttataaatagcaaaaactcagataatcaataagaagtacc 9291704  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 10335589 - 10335665
Alignment:
Q  115 attgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattct 192  Q
    |||||||||| || |||||||||| | |||||||||||  ||  |||||| ||||||||| |||||||||| ||||||    
T  10335589 attgaactgatat-aacttatacacaacaaaaactcagtcaaacaataagaagtaccttcccttgcttgtacgattct 10335665  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 10341038 - 10341082
Alignment:
Q  26 tcaaagtaattagagaatccttgttctataataagaattcaattt 70  Q
    |||| ||||||||||||||||| | |||| |||||||||||||||    
T  10341038 tcaaggtaattagagaatccttatcctatgataagaattcaattt 10341082  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 19393318 - 19393258
Alignment:
Q  15 aggtagagacttcaaagtaattagagaatc-----cttgttctataataagaattcaattt 70  Q
    |||| |||||||||||||||||||||||||     ||| | ||||||||||||||||||||    
T  19393318 aggttgagacttcaaagtaattagagaatctaatccttttcctataataagaattcaattt 19393258  T

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Target: scaffold0667 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 4067 - 4208
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||  ||||| || | |||||||||  ||| |||||||||    
T  4067 aaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaatttgagttttagcacagagtttaactaaataaatcatatga 4166  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaact 149  Q
    ||| || ||||||| || ||||||||||||| ||||||||||    
T  4167 tgggtccattgaacagatattaacttatacacagcaaaaact 4208  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 37462092 - 37462236
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg--cttttaacataaagtttaactgcatatatcatatg 106  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||||| |||| |  |||||| |||||||||||||    
T  37462092 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatg 37462191  T
Q  107 atggatctattgaactgaaattaacttatacagagcaaaaactca 151  Q
    |||| || | |||||| | |  |||||||||| | ||||||||||    
T  37462192 atgggtccaatgaactaacagaaacttatacataacaaaaactca 37462236  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 41967242 - 41967066
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||| || |||| |||||||||||||||  || | ||||||||||||||||||||  | ||||||||| ||||||| | ||| |||  |||||    
T  41967242 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 41967143  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgta 185  Q
    ||| || |||| ||| ||  |||| |||||| ||||||| || ||||||| || ||| ||||||||||||||||||||    
T  41967142 tgggtccattgcact-aatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttgta 41967066  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26574525 - 26574580
Alignment:
Q  16 ggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg 71  Q
    |||| |||| |||||||||||||||||||||| | |||| ||||||||||||||||    
T  26574525 ggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttg 26574580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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