View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_high_5 (Length: 429)
Name: NF15232_high_5
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 25897103 - 25897371
Alignment:
| Q |
1 |
tactgtgataatcaaagtactctgtctatggcacacaaccccgttcttcatgctcgtaccaagcacatggagatagacctattttttgttcgtgagaaag |
100 |
Q |
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| T |
25897103 |
tactgtgataatcaaagtactctggctatggcacacaaccc-gttcttcatgctcgtaccaagcacatggagatagacctattttttgtccgtgagaaag |
25897201 |
T |
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| Q |
101 |
ttttgggcaaggtccttgatgttgttcatattcctggttcaactcagaaacattttcaccaagccattggctactgctaagttcttggagtttaggtgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25897202 |
ttttgggcaaggtccttgatgttgttcatattcctggttcaactcagaaacattttcaccaagccattggctactgctaagttcttggagtttaggtaca |
25897301 |
T |
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| Q |
201 |
agctcaaagtggctgccccacccggaccttgcagggtgtgtgtgaatgtattagaataaaaagagcttag |
270 |
Q |
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| T |
25897302 |
agctcaaagtggctgccccacccagaccttgcagggtgtgtgtgaatgtattagaataaaaagaacttag |
25897371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 266 - 415
Target Start/End: Original strand, 25898133 - 25898282
Alignment:
| Q |
266 |
cttagttagttcaaacttaagctcactgagtcaggaattcagtgtcactcttatatctctctctcttttcttttagtgacagctgttagtacagctcatg |
365 |
Q |
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| T |
25898133 |
cttagttagttcaaacttaagctcactgagtcaggaatacagtgtcactcttatatctctttctcttttcttttagtgacagctgttagtacagctcatg |
25898232 |
T |
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| Q |
366 |
cttagctgatgccagctggcacagtctgttacaaataagcactagtataa |
415 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
25898233 |
cttagctgatgctaactggcacagtctgttacaaataagcactagtataa |
25898282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 25892477 - 25892574
Alignment:
| Q |
239 |
tgtgtgaatgtattagaataaaaagagcttagttagttcaaacttaagctcactgagtcaggaattcagtgtcactcttatatctctctctcttttcttt |
338 |
Q |
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|||||||||||||||||||||| ||| || |||||||||||||||||||| ||||| |||||||||| ||||| ||| |||||||||||| |
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| T |
25892477 |
tgtgtgaatgtattagaataaatagaactcagttagttcaaacttaagcttactga-----------agtgtcactcatatatatctttctcttttcttt |
25892565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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