View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_high_6 (Length: 398)
Name: NF15232_high_6
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_high_6 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 30089 - 30460
Alignment:
| Q |
11 |
cataggttcaagcaaagacgctaacatctacactgaaatggacatcgacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaa |
110 |
Q |
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| T |
30089 |
cataggttcaagcaaagacgctaacatctacactgaaatggacatcgacctcaacgatgaagatccatccaacgctgaaatcctcaacgaactcggcgaa |
30188 |
T |
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| Q |
111 |
gatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcactt |
210 |
Q |
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| T |
30189 |
gatatgttcaaatacttttgcaaaagagcttccgtcatgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaattcatcactt |
30288 |
T |
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| Q |
211 |
ctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggttttgatccttctaagaaagctgttgatgaacattaccaatatgccac |
310 |
Q |
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| T |
30289 |
ctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggttttgatccttctaagaaagctgttgatgaacattaccaatatgccac |
30388 |
T |
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| Q |
311 |
ggttaagtttgggaatgtaacgcttgaacgacctaagttttggtgtggtgaagggaatgctcaagagatgaa |
382 |
Q |
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| T |
30389 |
ggttaagtttgggaatgttacgcttgaacgacctaagttttggtgtggtgaagggaatgctcaagagatgaa |
30460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 48883608 - 48883228
Alignment:
| Q |
11 |
cataggttcaagcaaagacgctaacatc------tacactgaaatggacatcgacct---caacgatgaagatccatccaacgctgaaatcctcaacgaa |
101 |
Q |
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| T |
48883608 |
cataggttcaagcaaagatgctaacaacaccaactacacagaaatggacattgaccttgacgacgatgaagatcaatccaacgccgaaatcctcaacgaa |
48883509 |
T |
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| Q |
102 |
ctcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaatacggtttaatcagtcaccaaatcaactcctataatcaat |
201 |
Q |
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| T |
48883508 |
ctcggcgacgatatggtcaaatacttttgcaagaaagcttccgttatgttcttcgaccaatacggtttaatcagtcaccaaatcaactcgtacaatcaat |
48883409 |
T |
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| Q |
202 |
tcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggttttgatccttctaagaaagctgttgatgaacattacca |
301 |
Q |
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|||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
48883408 |
tcatcaattcgggtcttcaaagcgctttcgattccttcggtgatctcactgttacgcctggttttgatccttctaagaaaggtgctgatgaacattaccg |
48883309 |
T |
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| Q |
302 |
atatgccacggttaagtttgggaatgtaacgcttgaacgacctaagttttggtgtggtgaagggaatgctcaagagatgaa |
382 |
Q |
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| T |
48883308 |
ttatgctacggttaagtttgggaaggttacgcttgagcgacctaagttttggtgtggtgaagggaatgctcaagagttgaa |
48883228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 282
Target Start/End: Complemental strand, 53014798 - 53014590
Alignment:
| Q |
75 |
ccatccaacgctgaaatcctcaacgaactcggcgaagatatgttcaaatacttttgcaaaaaagcttccgtcatgttcttcgatcaatacggtttaatca |
174 |
Q |
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||||| || |||||||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||| || |||||||| | | ||||||||||||| |
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| T |
53014798 |
ccatcaaatgctgaaatcctcaacgaactaggtgaagacatggtcaaatatttctgcaaaaaagcttccatcgtgttcttcaacgagtacggtttaatca |
53014699 |
T |
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| Q |
175 |
gtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgcc-gggttttgatcctt |
273 |
Q |
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| T |
53014698 |
gtcaccaaatcaattcctataattaattcatcacttctggtcttcaaaatgctttcaattcctttggagagcttacagttacgcctggtttttgaccctt |
53014599 |
T |
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| Q |
274 |
ctaagaaag |
282 |
Q |
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| T |
53014598 |
ctacgaaag |
53014590 |
T |
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