View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15232_low_1 (Length: 822)

Name: NF15232_low_1
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15232_low_1
NF15232_low_1
[»] chr7 (14 HSPs)
chr7 (703-820)||(26241969-26242086)
chr7 (729-820)||(26297043-26297134)
chr7 (729-812)||(26178681-26178764)
chr7 (722-820)||(26154794-26154892)
chr7 (703-820)||(26250408-26250534)
chr7 (735-813)||(26184876-26184954)
chr7 (738-812)||(19104013-19104087)
chr7 (755-820)||(26128191-26128256)
chr7 (738-813)||(26082337-26082412)
chr7 (738-813)||(26106124-26106199)
chr7 (113-221)||(26295895-26296005)
chr7 (735-812)||(26190869-26190946)
chr7 (752-820)||(26301432-26301500)
chr7 (169-215)||(32083997-32084043)
[»] chr4 (2 HSPs)
chr4 (739-812)||(44902849-44902922)
chr4 (162-216)||(18990908-18990962)
[»] chr3 (1 HSPs)
chr3 (162-221)||(36073083-36073142)
[»] chr8 (1 HSPs)
chr8 (162-214)||(5061071-5061123)
[»] chr1 (1 HSPs)
chr1 (169-213)||(31361068-31361112)
[»] chr2 (1 HSPs)
chr2 (162-221)||(19002350-19002409)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 703 - 820
Target Start/End: Original strand, 26241969 - 26242086
Alignment:
Q  703 ccttaaataacaactttcccagtaatagaaccaagcaacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgct 802  Q
    ||||||||| ||| | ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||  |    
T  26241969 ccttaaatatcaattctcctagtaatagaaccaagcaacaatggaatctcaacaatcccataacaaacttcatgttgtttttcttccatatccagctatt 26242068  T
Q  803 ggccatatgaaccctatg 820  Q
    ||||||||||||||||||    
T  26242069 ggccatatgaaccctatg 26242086  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 729 - 820
Target Start/End: Original strand, 26297043 - 26297134
Alignment:
Q  729 agaaccaagcaacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatgaaccctatg 820  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  26297043 agaaccaagcaacaatggagtctcaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatg 26297134  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 729 - 812
Target Start/End: Original strand, 26178681 - 26178764
Alignment:
Q  729 agaaccaagcaacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatga 812  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||    
T  26178681 agaaccaagcaacaatggagtctcaacaatcccataacaaacttcatgttgtttttcttccatttccaactcctggtcatatga 26178764  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 722 - 820
Target Start/End: Original strand, 26154794 - 26154892
Alignment:
Q  722 cagtaatagaaccaagcaacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatgaaccctatg 820  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||   |||||||||| |||||  | ||||||||||||| ||||||    
T  26154794 cagtaatagaaccaagcaacaatggagtctcaacaatcccataaccaacttcatgtaacttttcttccacatccaagtcctggccatatgaatcctatg 26154892  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 703 - 820
Target Start/End: Original strand, 26250408 - 26250534
Alignment:
Q  703 ccttaaataacaactttcccagtaatagaaccaagcaacaatggagtccc---------aacaatcccataacaaacttcatgttgtttttcttccatat 793  Q
    ||||||||| ||||| ||  ||||||||||||||||||||||||| || |         |||||||| ||||| ||||||||||||||||||||||||||    
T  26250408 ccttaaatatcaactctcttagtaatagaaccaagcaacaatggattctcctcaatctcaacaatccaataaccaacttcatgttgtttttcttccatat 26250507  T
Q  794 ccatctgctggccatatgaaccctatg 820  Q
    ||||||||||| |||||||||||||||    
T  26250508 ccatctgctggtcatatgaaccctatg 26250534  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 735 - 813
Target Start/End: Original strand, 26184876 - 26184954
Alignment:
Q  735 aagcaacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatgaa 813  Q
    ||||||||||||| |||||| ||||||||||||||||||||||  ||||| ||||||||||| || |||||||||||||    
T  26184876 aagcaacaatggactcccaataatcccataacaaacttcatgtaatttttgttccatatccaactcctggccatatgaa 26184954  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 738 - 812
Target Start/End: Complemental strand, 19104087 - 19104013
Alignment:
Q  738 caacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatga 812  Q
    |||||||||| || ||||||||||||||| ||||||||||   |||||||||||||||| || | ||||||||||    
T  19104087 caacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactccaggccatatga 19104013  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 755 - 820
Target Start/End: Original strand, 26128191 - 26128256
Alignment:
Q  755 caatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatgaaccctatg 820  Q
    |||| ||||||| |||||||||||||||||||| ||||||||  | ||||||||||||| ||||||    
T  26128191 caattccataaccaacttcatgttgtttttctttcatatccaagtcctggccatatgaatcctatg 26128256  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 738 - 813
Target Start/End: Original strand, 26082337 - 26082412
Alignment:
Q  738 caacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatgaa 813  Q
    ||||||||||||| |||||||| |||||| |||||||  |  ||||| ||||||||||| || |||||||||||||    
T  26082337 caacaatggagtctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggccatatgaa 26082412  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 738 - 813
Target Start/End: Original strand, 26106124 - 26106199
Alignment:
Q  738 caacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatgaa 813  Q
    ||||||||||||| |||||||| |||||| |||||||  |  ||||| ||||||||||| || |||||||||||||    
T  26106124 caacaatggagtctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggccatatgaa 26106199  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 26295895 - 26296005
Alignment:
Q  113 aaaaatgtttaatttatttttgaatttgttgcccttaa-catcttggaatattaagtttgtatttctttttctaaa-ggtgtctaatttgctttgaacat 210  Q
    |||||||||||||||  ||||||||||| |||| |||| |||||||    |||||||| |||||| |||| | ||| |||||||| |||||||| | |||    
T  26295895 aaaaatgtttaatttggttttgaatttgctgcctttaatcatcttgagggattaagttggtatttgttttccaaaaaggtgtctattttgctttcagcat 26295994  T
Q  211 ttgacttcttt 221  Q
    |||||||||||    
T  26295995 ttgacttcttt 26296005  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 735 - 812
Target Start/End: Original strand, 26190869 - 26190946
Alignment:
Q  735 aagcaacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatga 812  Q
    |||||| |||| | || |||||||||||||||  |||||||||   ||||||||||| ||||||| ||||||||||||    
T  26190869 aagcaataatgaaatctcaacaatcccataacccacttcatgtaacttttcttccatttccatctcctggccatatga 26190946  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 752 - 820
Target Start/End: Original strand, 26301432 - 26301500
Alignment:
Q  752 caacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatgaaccctatg 820  Q
    ||||||||| ||||| ||||||||||  |||||||||||| |||| || |||| |||||||| ||||||    
T  26301432 caacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggtcatatgaatcctatg 26301500  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 32084043 - 32083997
Alignment:
Q  169 ttgtatttctttttctaaaggtgtctaatttgctttgaacatttgac 215  Q
    |||||||||||||  ||||||| ||| ||||||||||||||||||||    
T  32084043 ttgtatttcttttcttaaaggtatctcatttgctttgaacatttgac 32083997  T

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Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 739 - 812
Target Start/End: Original strand, 44902849 - 44902922
Alignment:
Q  739 aacaatggagtcccaacaatcccataacaaacttcatgttgtttttcttccatatccatctgctggccatatga 812  Q
    ||||||||| || ||||||||| ||||| |||||||||| |||||||||||||||||| || ||||||||||||    
T  44902849 aacaatggattctcaacaatccaataaccaacttcatgtagtttttcttccatatccaactcctggccatatga 44902922  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 18990962 - 18990908
Alignment:
Q  162 attaagtttgtatttctttttctaaaggtgtctaatttgctttgaacatttgact 216  Q
    |||||| ||| ||||||| || ||||||| |||| ||||||||||||||||||||    
T  18990962 attaagcttgcatttcttcttataaaggtttctattttgctttgaacatttgact 18990908  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 36073142 - 36073083
Alignment:
Q  162 attaagtttgtatttctttttctaaaggtgtctaatttgctttgaacatttgacttcttt 221  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  36073142 attaagcttgtatttctttttctaaaggtttctaatttgctttgatcatttgactccttt 36073083  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 5061123 - 5061071
Alignment:
Q  162 attaagtttgtatttctttttctaaaggtgtctaatttgctttgaacatttga 214  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||||||||    
T  5061123 attaagcttgtatttcattttctaaaggtttctaatttgctttgaacatttga 5061071  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 31361068 - 31361112
Alignment:
Q  169 ttgtatttctttttctaaaggtgtctaatttgctttgaacatttg 213  Q
    |||||||||||| ||||||||| |||||||||||||||| |||||    
T  31361068 ttgtatttctttctctaaaggtttctaatttgctttgaaaatttg 31361112  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 19002409 - 19002350
Alignment:
Q  162 attaagtttgtatttctttttctaaaggtgtctaatttgctttgaacatttgacttcttt 221  Q
    |||||| ||||||||||||| |||| ||| ||||||||||||| ||||||| ||| ||||    
T  19002409 attaagcttgtatttcttttactaatggtttctaatttgctttcaacatttaactccttt 19002350  T

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